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Report for CCDS16652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16652.1 Public Mus musculus 2 Ctdspl2 23 108 98 CCDS HistoryNCBI Gene:329506Re-query CCDS DB by CCDS ID:16652.1Re-query CCDS DB by GeneID:329506See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16652.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036647.12 ENSMUSP00000047543.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036647.12Link to Ensembl Protein Viewer:ENSMUSP00000047543.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000036647Re-query CCDS DB by Protein ID:ENSMUSP00000047543
Original member Current member EBI ENSMUST00000110574.7 ENSMUSP00000106203.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110574.7Link to Ensembl Protein Viewer:ENSMUSP00000106203.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110574Re-query CCDS DB by Protein ID:ENSMUSP00000106203
Original member Current member NCBI NM_212450.4 NP_997615.1 Accepted alive Link to Nucleotide Sequence:NM_212450.4Link to Protein Sequence:NP_997615.1Re-query CCDS DB by Nucleotide ID:NM_212450Re-query CCDS DB by Protein ID:NP_997615Link to BLAST:NP_997615.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997615.1 465 Q8BG15-1 465 100% 0 0

Chromosomal Locations for CCDS 16652.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 121969094 121969279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121977331 121977469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121978892 121979041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121981152 121981364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121986949 121987027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121988790 121988901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121993346 121993432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122003901 122003963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122004068 122004147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122006863 122006989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122007721 122007816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122010563 122010628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGAAGCTGAGAACACGGAAGGCTTCTCAGCAGTCCAGTCCAATCCAGACACAGCGCACTGCCAGAGCAA
AGAGGAAATACTCAGAGGTTGATGATAGCTTGCCTTCAGGAGGAGAAAAACCATCAAAGAATGAAACCGG
CTTATTGTCTTCAATTAAAAAGTTCATTAAAGGAAGCACACCCAAGGAAGAGAGAGAAAATCCTTCGAAG
CGGAGTAGAATTGAACGTGATATAGATAATAATTTAATCACATCAACACCAAGAACCGGAGAAAAGCCTG
ACAAACAGTTGTCTCGAGTAAGACGGAAAAGTCCAGTCAATGGAGAAGCTGGTAGTTATGAAATGACAAA
TCAACATATAAAGCAAAATGGAAAATTAGAAGATAACCCTTGCTCTGGTAGTCCTCCGAGGACTACATTG
TTGGGGACCATATTTTCGCCTGTCTTCAACTTTTTTTCACCAGCAAATAAAAATGGAACGTCAGGCTCAG
ATTCCCCAGGACAGGCTGTGGAAGCTGAGGAGATAGTGAAACAACTTGACATGGAACAGGTGGATGAAAT
TACTACCAGCACCACGTCAGCTAATGGAGCGGCTTACTCAAATCAAGCAGTTCAAGTGAGGCCATCACTA
AATAATGGTTTAGAAGAAGCAGAAGAAACAGTTACCCGGGATATCCCACCCCTTACAGCACCAGTAACTC
CAGAGAGTGGGTACTCGTCAGCCCATGCAGAGGCCACCTATGAAGAAGACTGGGAAGTATTTGACCCCTA
TTATTTCATCAAACATGTTCCGCCTCTGACAGAAGAACAGCTAAATAGGAAACCTGCTCTTCCTTTGAAA
ACAAGAAGCACACCAGAGTTCTCCCTGGTCTTAGATCTGGATGAGACACTAGTGCACTGCAGTCTGAATG
AGCTAGAAGATGCAGCGCTCACTTTTCCAGTCCTTTTCCAAGATGTCATTTATCAGGTTTATGTGAGATT
AAGACCATTCTTCAGGGAATTCCTGGAACGAATGTCTCAGATGTATGAGATCATTCTTTTTACTGCTTCT
AAGAAGGTGTATGCAGACAAGTTACTGAACATACTAGACCCTAAAAAGCAACTGGTCAGGCACCGGCTTT
TCCGTGAACATTGTGTTTGTGTACAAGGAAACTATATAAAGGACTTGAATATCCTTGGGAGAGATCTTTC
CAAAACTATAATAATTGACAACTCACCACAAGCCTTTGCCTATCAGCTTTCTAATGGAATCCCTATAGAA
AGCTGGTTTATGGATAAAAATGACAATGAACTCCTAAAATTGATTCCATTTCTGGAGAAGCTTGTAGAAC
TGAATGAAGATGTCCGGCCTCACATCAGAGACAGATTTCGATTGCATGATTTGCTGCCCCCAGATTAA

Translation (465 aa):
MKLRTRKASQQSSPIQTQRTARAKRKYSEVDDSLPSGGEKPSKNETGLLSSIKKFIKGSTPKEERENPSK
RSRIERDIDNNLITSTPRTGEKPDKQLSRVRRKSPVNGEAGSYEMTNQHIKQNGKLEDNPCSGSPPRTTL
LGTIFSPVFNFFSPANKNGTSGSDSPGQAVEAEEIVKQLDMEQVDEITTSTTSANGAAYSNQAVQVRPSL
NNGLEEAEETVTRDIPPLTAPVTPESGYSSAHAEATYEEDWEVFDPYYFIKHVPPLTEEQLNRKPALPLK
TRSTPEFSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIILFTAS
KKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIE
SWFMDKNDNELLKLIPFLEKLVELNEDVRPHIRDRFRLHDLLPPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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