CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS16762.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
16762.1 |
Public |
Mus musculus |
2 |
Rnf24 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:51902](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:16762.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:51902](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 16762.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000059372.10 |
ENSMUSP00000058630.4 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000059372.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000058630.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000059372](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000058630](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000110194.7 |
ENSMUSP00000105823.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000110194.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000105823.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000110194](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000105823](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000165420.7 |
ENSMUSP00000129843.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000165420.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000129843.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000165420](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000129843](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_178607.4 |
NP_848722.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_178607.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_848722.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_178607](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_848722](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_178607.5 |
NP_848722.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_178607.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_848722.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_178607](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_848722](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_848722.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_848722.1 |
148 |
Q8BGI1 |
148 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 16762.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (447 nt): ATGAGCTCAGATTTCCCACATTATAACTTCAGGATGCCTAATATTGGATTCCAGAATCTGCCTCTCAACA TCTATATCGTGGTTTTTGGCACTGCTGTGTTTGTCTTCATCCTTAGTTTACTCTTCTGTTGCTACTTGAT TAGGCTGAGACATCAAGCACACAAAGAATTTTATGCCTACAAACAGGTTATATTAAAAGAAAAAGTAAAA GAACTTAATCTACATGAGCTCTGTGCTGTGTGTCTAGAAGACTTCAAGCCTAGAGATGAACTGGGTATTT GCCCATGTAAGCATGCCTTCCACAGAAAGTGCCTTGTTAAGTGGCTGGAAGTCCGGAAAGTGTGTCCCCT GTGCAACATGCCGGTGCTGCAGCTGGCCCAATTGCACAGTAAACAGGACCGCGGTCCCCCTCAGGAGCCC CTCCCTGGGGCAGAGAATATTGTATAG
Translation (148 aa): MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAVFVFILSLLFCCYLIRLRHQAHKEFYAYKQVILKEKVK ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLVKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQEP LPGAENIV
|