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Report for CCDS16795.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16795.1 Public Mus musculus 2 Slx4ip 23 108 98 CCDS HistoryNCBI Gene:74243Re-query CCDS DB by CCDS ID:16795.1Re-query CCDS DB by GeneID:74243See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16795.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099311.8 ENSMUSP00000096914.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099311.8Link to Ensembl Protein Viewer:ENSMUSP00000096914.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099311Re-query CCDS DB by Protein ID:ENSMUSP00000096914
Original member Current member EBI ENSMUST00000180277.2 ENSMUSP00000136131.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180277.2Link to Ensembl Protein Viewer:ENSMUSP00000136131.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180277Re-query CCDS DB by Protein ID:ENSMUSP00000136131
Original member Current member NCBI NM_001038641.2 NP_001033730.1 Accepted alive Link to Nucleotide Sequence:NM_001038641.2Link to Protein Sequence:NP_001033730.1Re-query CCDS DB by Nucleotide ID:NM_001038641Re-query CCDS DB by Protein ID:NP_001033730Link to BLAST:NP_001033730.1
Original member Current member NCBI NM_028834.3 NP_083110.1 Accepted alive Link to Nucleotide Sequence:NM_028834.3Link to Protein Sequence:NP_083110.1Re-query CCDS DB by Nucleotide ID:NM_028834Re-query CCDS DB by Protein ID:NP_083110Link to BLAST:NP_083110.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033730.1 413 Q9D7Y9-1 413 100% 0 0
NP_083110.1 413 Q9D7Y9-1 413 100% 0 0

Chromosomal Locations for CCDS 16795.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 136905574 136905600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137000184 137000273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137004934 137005054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137044000 137044077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137046717 137046805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137066130 137066230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137067593 137068328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGGCATCTAAGAAATTTGCCGTTAAATGTGGGAACTTCGCAGTCCTGGTGGATCTTCATGTATTGCCAC
AAGGTTCAAACAGAGACTCCAGTTGGTTTTCTGAACAGAAGAAAGAGGAAGTTTGTTTGCTGTTAAAAGA
AACCATTGATTCCAGAGTTAAGGAGTATGTGGGCATTTATAAACAGCGCAAGCCATCAAGTGCAGAATTC
ACAAGATCCAGTCCCTTGTCCTTAAAAGGTTATGGCTTTCAGATCACAGCTTATTTCCTCAAGAGAGGGA
TACACCTTCACTGTATCCAGAACTCCCAGAATACTGAACTTCGTGTATTTCCTGAAAGATTTGTGGTGTG
TGTTAGTCAGCTTGCATTTGGTCATGATATTTGGGCAAACCAGAATGAAAAATCGACAAAAAAAGCCCTC
CATGGAGTGTCTGATTATTTTCCTGAGTGTGCAGAGAGTTCACCGTCTCCTGGTACAAAGCTCAAGAGGA
ACGCTCTGAAGGAAATTGTGAGAAGAACTAAATCAAAAGGCACTGATGTGAGCAAACCACAGCCCAGCGG
GGACCTCGTGGGAAGATCTAGTGACTCAGTAATTACTGTGGTACCATGGAGGAGGGATGCCTCAGCCATT
CTCCTGTCAGAATCTGTGGGTCAAGCACAAGATGACATAAGAGCAGCCAAGAGCCACCAGGAGCTTCCTG
TTCAAAAGCTGGAAAATGTTTCTCAGACTCAGCCAGGAGACACTCGCAGCCAGCAGCAACTTCATCCTGG
GGAGTGGTTGAAGACGGGGCTTCTAAGCAGGAGCCCTGCGTATAACTATGAGTCAGCATCACCAGGTCCA
AAGCAAAGTCTGAGAGCAGCCAAGACACAGCAGAAACACAGGAATTGTGGCTCTGTGGAAGACTGTGACC
ACCGCAGGAGAGTTTCTCTTGGAAATGAAGGATTAGTCCCGGAGGACGCGGATAGGGAAAGGAGCACAGC
TGTCAGGGTTTTACCAGCCTTAGAGTTGTCAGATCCTGGGTTGCTTTTGAAACAAGATTTGGCAAAAGCC
AAGGCTAAGGAAGAGCTACATGCTTTGGAAAATCTCTCCTCCAGACATCTTGTGACAAACAACCCGGGGC
AGGCACAGCAGAGCGACTCAGCTGCAATTACTGAACAATTAGCTACAGATCAGGGCGGCCCCAGCAAGAA
AAGAAAGAAACTACAAAGTTACAACAGAGGATGTAGTGGCAAGAAAAACTGA

Translation (413 aa):
MASKKFAVKCGNFAVLVDLHVLPQGSNRDSSWFSEQKKEEVCLLLKETIDSRVKEYVGIYKQRKPSSAEF
TRSSPLSLKGYGFQITAYFLKRGIHLHCIQNSQNTELRVFPERFVVCVSQLAFGHDIWANQNEKSTKKAL
HGVSDYFPECAESSPSPGTKLKRNALKEIVRRTKSKGTDVSKPQPSGDLVGRSSDSVITVVPWRRDASAI
LLSESVGQAQDDIRAAKSHQELPVQKLENVSQTQPGDTRSQQQLHPGEWLKTGLLSRSPAYNYESASPGP
KQSLRAAKTQQKHRNCGSVEDCDHRRRVSLGNEGLVPEDADRERSTAVRVLPALELSDPGLLLKQDLAKA
KAKEELHALENLSSRHLVTNNPGQAQQSDSAAITEQLATDQGGPSKKRKKLQSYNRGCSGKKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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