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Report for CCDS16811.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16811.1 Public Mus musculus 2 Bfsp1 23 108 98 CCDS HistoryNCBI Gene:12075Re-query CCDS DB by CCDS ID:16811.1Re-query CCDS DB by GeneID:12075See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16811.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028907.13 ENSMUSP00000028907.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028907.13Link to Ensembl Protein Viewer:ENSMUSP00000028907.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028907Re-query CCDS DB by Protein ID:ENSMUSP00000028907
Original member NCBI NM_009751.2 NP_033881.2 Updated not alive Link to Nucleotide Sequence:NM_009751.2Link to Protein Sequence:NP_033881.2Re-query CCDS DB by Nucleotide ID:NM_009751Re-query CCDS DB by Protein ID:NP_033881
Current member NCBI NM_009751.3 NP_033881.2 Accepted alive Link to Nucleotide Sequence:NM_009751.3Link to Protein Sequence:NP_033881.2Re-query CCDS DB by Nucleotide ID:NM_009751Re-query CCDS DB by Protein ID:NP_033881Link to BLAST:NP_033881.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033881.2 663 A2AMT1-2 663 100% 0 0

Chromosomal Locations for CCDS 16811.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 143826666 143827639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143830084 143830169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143831837 143832057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143841674 143841781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143845901 143845990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143848928 143849023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143858057 143858117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143862576 143862931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGTACCGCCGCAGCTACGTCTTCCAGGCCCGCCAGGAGCGCTACGAGCGCGCCCAGCCCGCGGGCCCCG
CCGCCCAGCCCGGGGGAACCGCGCCCGGCCTGGCAGCGCTGCAGGCGCTGGGCGAGCGCGTGGCAGTCCA
GGTCCAGCGGGCCCGCGCGCTCCAGCAGCGCCACGCCGGCCTGCGGCGGCAGCTCGACGCCTTCCAGCGC
CTGGGCGAGCAGCCCGGGCCCGAGGACGCGCTCGCCCGCCACGTCGAGGCCAATCTGCAGCGCGCCCGGG
ACCTGACAGCCGAGCACGCGCGGCTCGAGAGGCAGGAGGCCGAGGCGCAGCGCGCGCTCGACGAGTTCCG
CAGCAAATACGAAAATGAGTGTGAATGTCAGTTGGTGCTAAAGGAAATGCTGGAACGGCTTAACAAGGAA
GCCGATGAAGCCTTATTGCGTAACCTGCACCTTCAGTTGGAGGCACAGTTTCTGCAGGCAGATATCAGTG
TGGCCAAGGACAGGTACAAGAAGAATCTTCTGGAGATTCAGACCTACATCACCGTCCTGCAGCAGATCGT
ACAGACTGCTCCTCAAGTGTCCCTGGTTACTGGGATGAGGGAGGAGAAGCTGTTCACAGAACGGGAAGTG
GCTGCCCTGCAGAACCAGCTGGAGGAGGGCCGAGAGGCAGTCACCCACCTGCAGGCACAGAAAGCTGAGC
TGCAGGCCCAGACCACGGCCCTGGAACAAGCTATTAAGCATGCTCATGAGTGTTACGATGAGGAGCTACA
GCTTTACAACGAGCAGATCGAAAACCTTCGGAAGGAGATCGAGGAGGCGGAGCGGTCTCTGGAGAGGTCG
TCCTATGACTGCAGGCAGCTAGCCGTGGCCCAGCAGACGCTGAGGAATGAGCTAGACCGTTATCATCGGA
TCATTGAGATTGAAGGCAGCAGGCTGAGCTCTGTTTTCATTGAGACGCCCATCTCTCTGATCACCCCGAG
CCATGGGGCCCCTCTCAGCCTTGGATCCAGTGTGAAAGATCTTGCCAGGGCCGTGCAGGATATTACAGCA
GCTAAACCGAGACAGAAGGCCCTCCCCAAGAGCCTTCCAAAAAGAAAGGAGATTATAGCTCAAGATAAGG
TGGAGGAAACTCTGGAAGATGCACCATTAAAACCTCCGCAGGAGCCAAAGGCACTGCAGGTGGAACGGAA
AGCAGAAGGTGGCTCTCAGCCCGGAGCAGGGGGAGGACATGGAGTAAGTCCCACACAAGAAGGGGGTCCT
GAGGATGTGCCAGACGGGGGCCAGATAAGCAAAGCCTTTGGGAAACTGTGCAAAGTAGTGAAAGAGAGAG
TGAGCGGCCACAAAGAGCCCGAGCCTGAGCCGCCCACGGACCTTTTCACCAAAGGACGGCATGTACTCGT
CACAGGGGAGTCTAGTTTTGTTGACCCCGAGTTCTACTCCTCCTCCATCCCAGCTAGAGGTGGGGTGGTG
ATTTCCATTGAGGAAGACTCTATGCATCATGACGGCCACGTAGAGCCCTCTCCTGGACAGCCCATGCCAC
CTGTGGAGAATGGACAGGGCGTTCCCCAGGGCAGGGAAGGTGACCACTCAAACCATCAGCAGGGTACAGA
CAAGAATGGGTTACGGGCCAAGGAACCAAAAGACCTGGAGGAAAAAGATGATGATGGCAAGAAGGAAGCT
GAGGGGAGCAGGAGACCCTGTCCTGTGATCATACCTGGTCCTGATGAACCATCTACATCCCATTCACAGA
CGTCTGGGTCCAATCAGGGTGGACCAGTGGGGCCTGCGAGTAAGAGCAGTAGCCTGCTGGCAAAGGGCCC
TTCGAAGGCTCTGTCTATTAAGAAGGTGGAGGTGGTGGAATCCATTGAGAAGATTTCAACAGAGAGTATT
CAGACATATGAAGAGACTTCCGTAATTGTGGAGACTCTGATTGGGAAGTCAAAGGGCAACAAGAAACTGG
GAGAGAAGAGCTTGCCAGACACAAGGGCTTGA

Translation (663 aa):
MYRRSYVFQARQERYERAQPAGPAAQPGGTAPGLAALQALGERVAVQVQRARALQQRHAGLRRQLDAFQR
LGEQPGPEDALARHVEANLQRARDLTAEHARLERQEAEAQRALDEFRSKYENECECQLVLKEMLERLNKE
ADEALLRNLHLQLEAQFLQADISVAKDRYKKNLLEIQTYITVLQQIVQTAPQVSLVTGMREEKLFTEREV
AALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECYDEELQLYNEQIENLRKEIEEAERSLERS
SYDCRQLAVAQQTLRNELDRYHRIIEIEGSRLSSVFIETPISLITPSHGAPLSLGSSVKDLARAVQDITA
AKPRQKALPKSLPKRKEIIAQDKVEETLEDAPLKPPQEPKALQVERKAEGGSQPGAGGGHGVSPTQEGGP
EDVPDGGQISKAFGKLCKVVKERVSGHKEPEPEPPTDLFTKGRHVLVTGESSFVDPEFYSSSIPARGGVV
ISIEEDSMHHDGHVEPSPGQPMPPVENGQGVPQGREGDHSNHQQGTDKNGLRAKEPKDLEEKDDDGKKEA
EGSRRPCPVIIPGPDEPSTSHSQTSGSNQGGPVGPASKSSSLLAKGPSKALSIKKVEVVESIEKISTESI
QTYEETSVIVETLIGKSKGNKKLGEKSLPDTRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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