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Report for CCDS16872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16872.1 Public Mus musculus 2 Psmf1 23 108 98 CCDS HistoryNCBI Gene:228769Re-query CCDS DB by CCDS ID:16872.1Re-query CCDS DB by GeneID:228769See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16872.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042452.10 ENSMUSP00000041184.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042452.10Link to Ensembl Protein Viewer:ENSMUSP00000041184.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000042452Re-query CCDS DB by Protein ID:ENSMUSP00000041184
Original member Current member EBI ENSMUST00000109869.1 ENSMUSP00000105495.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109869.1Link to Ensembl Protein Viewer:ENSMUSP00000105495.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109869Re-query CCDS DB by Protein ID:ENSMUSP00000105495
Original member Current member NCBI NM_212446.2 NP_997611.1 Accepted alive Link to Nucleotide Sequence:NM_212446.2Link to Protein Sequence:NP_997611.1Re-query CCDS DB by Nucleotide ID:NM_212446Re-query CCDS DB by Protein ID:NP_997611Link to BLAST:NP_997611.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997611.1 271 Q8BHL8 271 100% 0 0

Chromosomal Locations for CCDS 16872.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 151718634 151718685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151719485 151719643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151720823 151720876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151729491 151729676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151734222 151734304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151735474 151735626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151741011 151741139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGGCGGGTCTCGAGGTTCTCTTCGCGTCGGCCGCTCCATCCATGAGCTGCCCGCAGGACGCACTCGTCT
GCTTCCTGCACTGGGAAGTGGTGACAAACGGCTACTATGCCTTGGGCACGGGCGACCAGCCAGGTCCCAG
TGATAAGAAATCAGAACTACTGCCAGCTAAGTGGAACAGCAATAAAGAACTGTATGCCCTCCGGTATGAG
TCTAAGGATGGAGCCAGAAAACTCCTTCTGAAAGCTGTCTCTGTGGAGAACGGCATGATCATCAACGTGC
TGGAACTTGGCACACAGCAGGTGGCAGACTTGACCCTGAACTTAGATGATTATATTGATGCAGAAGACCT
GAGTGACTTCCACAGGACCTATAAGAACAGTGAGGAGCTTCGGTCTCAGATCAGATCTGGAATTATCACA
CCTATCCATGAGCAGTGGGAGAAGGCTCGTGCAAACAGTCCTCCGAGGGAGTTCCCACCTGCCACTGCCA
GAGAGGTGGACCCACTCCAGATTTCCTCACACCGTCCTCATACTAGCAGGCAGCCTGCTTGGCGTGATCC
CCTGAGCCCATTTGCTGTCGGGGGAGATGACCTAGACCCTTTTGGGTGTCAGAGAGGTGGCATGATTGTG
GATCCCCTGAGATCCGGCTTCCCAAGAGTACTTATTGACCCATCCTCAGGCCTCCCAAACCGGCTTCCTC
CTGGTGCTGTGCCCCCAGGAGCTCGCTTTGACCCCTTTGGACCCATTGGGACCAGCCCATCTGGACCTAA
CCCTGACCATCTTCCCCCACCGGGCTACGATGACATGTACCTGTGA

Translation (271 aa):
MAGLEVLFASAAPSMSCPQDALVCFLHWEVVTNGYYALGTGDQPGPSDKKSELLPAKWNSNKELYALRYE
SKDGARKLLLKAVSVENGMIINVLELGTQQVADLTLNLDDYIDAEDLSDFHRTYKNSEELRSQIRSGIIT
PIHEQWEKARANSPPREFPPATAREVDPLQISSHRPHTSRQPAWRDPLSPFAVGGDDLDPFGCQRGGMIV
DPLRSGFPRVLIDPSSGLPNRLPPGAVPPGARFDPFGPIGTSPSGPNPDHLPPPGYDDMYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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