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Report for CCDS16888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16888.1 Public Mus musculus 2 Defb26 23 108 98 CCDS HistoryNCBI Gene:654457Re-query CCDS DB by CCDS ID:16888.1Re-query CCDS DB by GeneID:654457See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16888.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099205.1 ENSMUSP00000096811.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099205.1Link to Ensembl Protein Viewer:ENSMUSP00000096811.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099205Re-query CCDS DB by Protein ID:ENSMUSP00000096811
Original member NCBI NM_001039120.2 NP_001034209.1 Updated not alive Link to Nucleotide Sequence:NM_001039120.2Link to Protein Sequence:NP_001034209.1Re-query CCDS DB by Nucleotide ID:NM_001039120Re-query CCDS DB by Protein ID:NP_001034209
Current member NCBI NM_001039120.3 NP_001034209.1 Accepted alive Link to Nucleotide Sequence:NM_001039120.3Link to Protein Sequence:NP_001034209.1Re-query CCDS DB by Nucleotide ID:NM_001039120Re-query CCDS DB by Protein ID:NP_001034209Link to BLAST:NP_001034209.1

Chromosomal Locations for CCDS 16888.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152507798 152508300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152511635 152511692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGATTTTCCTAACACTGGCCTTCATTGTCCATGGGTTGCTAACTCAGGGGAACAAAGCTGCCTGGAGGA
GACCCATACCAAAATGCTGGAAGAATAGTTTAGGGTACTGCAGAGTCCGATGTCAAGAAGAGGAACGGTA
CATATATCTGTGTAAGAACAAAGTATCATGCTGCATTCACCGAACTCTATCAGAAGACAAACTACCCTCA
GGACCTCCCATACACACTGTAACAAGAGTGATCCCTAGTTTCAATATACCAGTGAATTCATCAGCGACCC
GACTTACTGATAACTGGGATGCAAATGACTCTAAAACACCCATAGGAACTATCGTCAATCCTGCAGGTAT
TGGCAAGACACCCACAGGAACTACTGTCAATCCTGCAGGTATTGGCAAGATGCCCACAGGAACTACCGTC
AATCCTGCAGGTATTGGCAAGACACCCACAGGAACTACCGTCAATCCTGCTGGTATTGGCAAGACACCCA
CAACCACCACACCTATCTATTCCTGGGCCACTAACACTAAACCATTCACTATGATGCCTAATACTACTTA
A

Translation (186 aa):
MIFLTLAFIVHGLLTQGNKAAWRRPIPKCWKNSLGYCRVRCQEEERYIYLCKNKVSCCIHRTLSEDKLPS
GPPIHTVTRVIPSFNIPVNSSATRLTDNWDANDSKTPIGTIVNPAGIGKTPTGTTVNPAGIGKMPTGTTV
NPAGIGKTPTGTTVNPAGIGKTPTTTTPIYSWATNTKPFTMMPNTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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