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Report for CCDS16931.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16931.1 Public Mus musculus 2 Cdk5rap1 23 108 98 CCDS HistoryNCBI Gene:66971Re-query CCDS DB by CCDS ID:16931.1Re-query CCDS DB by GeneID:66971See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16931.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028990.9 ENSMUSP00000028990.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028990.9Link to Ensembl Protein Viewer:ENSMUSP00000028990.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028990Re-query CCDS DB by Protein ID:ENSMUSP00000028990
Original member Current member EBI ENSMUST00000109731.7 ENSMUSP00000105353.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109731.7Link to Ensembl Protein Viewer:ENSMUSP00000105353.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109731Re-query CCDS DB by Protein ID:ENSMUSP00000105353
Original member Current member NCBI NM_025876.2 NP_080152.1 Accepted alive Link to Nucleotide Sequence:NM_025876.2Link to Protein Sequence:NP_080152.1Re-query CCDS DB by Nucleotide ID:NM_025876Re-query CCDS DB by Protein ID:NP_080152Link to BLAST:NP_080152.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080152.1 588 Q8BTW8 588 100% 0 0

Chromosomal Locations for CCDS 16931.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 154335531 154335617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154342301 154342441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154345866 154346015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154348651 154348781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154350818 154350873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154352182 154352279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154353190 154353420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154354090 154354210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154360557 154360767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154365962 154366062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154368214 154368248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154368812 154368915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154370636 154370936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGCATCCTTTACGGTGTGTCCTCCAAGTACAGAGGTTGTCAGCACCATTCACCTCCATGTGCTGGGTGT
TGCTTAGGACCTGCAGAGCACAAAGCAGTGTGTCCAGCACTCCTTGTCCCAGTCCAGAGGCGAAGAGCTC
AGAAGCTCAGAAGGACTTCAGCTCCAGGCTAGCCACTGGACCGACTTTTCAGCATTTTTTAAGAAGTGCT
TCAGTTCCTCAAGAGAAACCATCTTCTCCAGAGGTGGAGGACCCACCTCCCTATCTCTCGGGGGATGAAC
TTCTAGGAAGGCAGAGAAAAGTCTACCTCGAGACCTATGGCTGTCAGATGAACGTGAACGACACAGAGAT
AGCCTGGTCCATCTTACAGAAGAGTGGCTACCTTCGGACCAGCAACCTCCAAGAGGCTGATGTGATCCTT
CTTGTCACGTGTTCTATCAGGGAGAAGGCCGAGCAGACCATCTGGAACCGCTTACATCAGCTCAAAGTCC
TGAAGACAAAGCGGCCACGCTCTCGAGTACCTCTGAGGATTGGGATTCTAGGCTGCATGGCTGAGAGGCT
GAAGGGAGAGATCCTCAACAGGGAGAAGATGGTAGATCTCTTGGCTGGTCCAGACGCCTACCGAGACCTT
CCCCGGCTGCTGGCTGTGGTGGAGTCAGGTCAGCAAGCAGCAAATGTGCTTCTCTCTCTGGATGAGACCT
ACGCAGATATCATGCCAGTCCAGACGAGCCCCAGTGCCACTTCTGCCTTTGTATCCATTATGCGGGGCTG
CGACAACATGTGCAGTTACTGTATCGTGCCGTTCACGCGTGGCCGGGAGAGGAGCCGGCCAGTTGCCTCC
ATTCTCGATGAAGTGAGGAAGCTGTCCGAGCAGGGCCTAAAAGAAGTGACACTTCTTGGTCAGAATGTTA
ATAGTTTTCGGGACAATTCGGAAGTCCAGTTCAATAATGCAGGGTCTGCTAACCTCAGCCGTGGCTTTAC
CACCAACTATAAACCCAAACAAGGAGGGCTTCGTTTTTCTCACCTTCTGGATCAGGTTTCAAGAATCGAT
CCTGAAATGAGGATCCGATTCACCTCTCCTCACCCCAAGGATTTTCCTGATGAGGTTCTTCAGCTGATTC
GTGAGAGACACAACATCTGTAAGCAGATCCACCTGCCAGCCCAGAGTGGAAGCAGCCGTGTACTGGATGC
CATGCGGAGAGGATATTCAAGAGAAGCATATGTGGCATTAGTTCATCATGTCAGAGAGACTATCCCAGGT
GTGAGCCTTAGCAGCGACTTCATCACTGGCTTTTGTGGAGAGACAGAGGATGATCACCGGCAGACAGTGT
CTTTACTTAGAGAAGTGCAGTATAATACCGGTTTTCTCTTTGCATACAGCATGAGGCAAAAGACACGAGC
ATATCACAGGCTGAAGGATGATGTTCCAGAAGAAGTAAAATTAAGGCGTTTGGAGGAACTCATTACTGTC
TTCAGAGAAGAAGCTTCAAAAGCCAATAAGACCTCAGTGGGTTGTAGCCAGCTGGTACTGGTTGAAGGGT
TCAGCAAACGTTCTACCACAGACCTTTGTGGCCGGAATGATGCAAACCTTAAGGTGATTTTCCCTGACGC
AGAGGTGGAGGATATCACTAACCCTGGGCTCAAGGTCAGAGCTCAACCTGGGGACTATGTGCTGGTGAAG
ATCACCTCTGCCAGCTCTCAGACCCTGAAAGGACACATTCTCTGCAGGACCACTATGAAAGACTCATTGA
CGTATTGCACGACCTGA

Translation (588 aa):
MHPLRCVLQVQRLSAPFTSMCWVLLRTCRAQSSVSSTPCPSPEAKSSEAQKDFSSRLATGPTFQHFLRSA
SVPQEKPSSPEVEDPPPYLSGDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVIL
LVTCSIREKAEQTIWNRLHQLKVLKTKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDL
PRLLAVVESGQQAANVLLSLDETYADIMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVAS
ILDEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAGSANLSRGFTTNYKPKQGGLRFSHLLDQVSRID
PEMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVLDAMRRGYSREAYVALVHHVRETIPG
VSLSSDFITGFCGETEDDHRQTVSLLREVQYNTGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITV
FREEASKANKTSVGCSQLVLVEGFSKRSTTDLCGRNDANLKVIFPDAEVEDITNPGLKVRAQPGDYVLVK
ITSASSQTLKGHILCRTTMKDSLTYCTT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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