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Report for CCDS16957.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16957.2 Public Mus musculus 2 Uqcc1 23 108 98 CCDS HistoryNCBI Gene:56046Re-query CCDS DB by CCDS ID:16957.2Re-query CCDS DB by GeneID:56046See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 16957.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 16957.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109636.10 ENSMUSP00000105264.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109636.10Link to Ensembl Protein Viewer:ENSMUSP00000105264.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000109636Re-query CCDS DB by Protein ID:ENSMUSP00000105264
Original member Current member NCBI NM_018888.4 NP_061376.2 Accepted alive Link to Nucleotide Sequence:NM_018888.4Link to Protein Sequence:NP_061376.2Re-query CCDS DB by Nucleotide ID:NM_018888Re-query CCDS DB by Protein ID:NP_061376Link to BLAST:NP_061376.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061376.2 295 Q9CWU6-1 295 100% 0 0

Chromosomal Locations for CCDS 16957.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 155848392 155848526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155851359 155851472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155858112 155858189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155887109 155887217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155901298 155901355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155909353 155909425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155910357 155910464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155911741 155911836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155921635 155921727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155930013 155930036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGGCGTTGCTGGTGCGAGTCCTTAGGAACCAGACTAGCATCTCTCAGTGGGTTCCAGTATGCAGCCAAC
TGGTATCAGTGTCTCCTACCCAAAGACAGTGGAGCAGCACTTCCCAGTGGCTCCAGAAGAATCAGTCTCG
AGTGTGTTTGGGATCAGAACAGACTGTTGGAGCGGACACAGCGCAGAATAGGAAATACCACAACACAAGT
AAGCTTCTTACTACCCAAGATTTCCCACAGCCTGTTGAAGAGAAGGTCGGTCCCTTCACGAAGATAATAG
AAGCCATGGGATTCACTGGACCTTTGAAATACAGTAAATGGAAGATCAAGATCGCGGCCCTCCGCATGTA
CACGAGCTGCGTGGAGAAGACTGACTTCGAGGAGTTCTTTCTGAGGTGTCAGATGCCCGATACATTCAAC
TCCTGGTTTCTCATAACCCTGCTTCATGTCTGGATGTGTCTAGTCCGAATGAAGCAGGAAGGCCGGACTG
GGAAGTACATGTGCCGGATCATAGTTCATTTCATGTGGGAAGATGTGGAGCAGCGCGGCCGCGTCATGGG
GGTTAATTCCTATATCCTAAAGAAGAACATGGCCCTCATGACGAACAATTTCTATGCAGCAATCTTGGGA
TACGATGAGGGGATCCTTTCAGATGACCATGGCCTGGCTGCTGCGCTCTGGAGGACCTTCTTCAACCAGA
AATGTGAGGACCCTCGACAGCTTGAATTGCTGGTGGAATATGTGAGGAAACAGATGCAATACCTGGACTC
CATGAACGGTGAGGATCTGCTGCTGACAGGGGAAGTGAGATGGCGCCCTCTGGTGGAGAAGAATCCACAA
AGCATCTTGAAGCCCCATGCTCCTACTTACAATGATGAGGGCCTTTGA

Translation (295 aa):
MALLVRVLRNQTSISQWVPVCSQLVSVSPTQRQWSSTSQWLQKNQSRVCLGSEQTVGADTAQNRKYHNTS
KLLTTQDFPQPVEEKVGPFTKIIEAMGFTGPLKYSKWKIKIAALRMYTSCVEKTDFEEFFLRCQMPDTFN
SWFLITLLHVWMCLVRMKQEGRTGKYMCRIIVHFMWEDVEQRGRVMGVNSYILKKNMALMTNNFYAAILG
YDEGILSDDHGLAAALWRTFFNQKCEDPRQLELLVEYVRKQMQYLDSMNGEDLLLTGEVRWRPLVEKNPQ
SILKPHAPTYNDEGL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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