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Report for CCDS17009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17009.1 Public Mus musculus 2 Oser1 23 108 98 CCDS HistoryNCBI Gene:66680Re-query CCDS DB by CCDS ID:17009.1Re-query CCDS DB by GeneID:66680See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17009.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046908.9 ENSMUSP00000039190.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046908.9Link to Ensembl Protein Viewer:ENSMUSP00000039190.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000046908Re-query CCDS DB by Protein ID:ENSMUSP00000039190
Original member Current member EBI ENSMUST00000104954.8 ENSMUSP00000131932.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000104954.8Link to Ensembl Protein Viewer:ENSMUSP00000131932.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000104954Re-query CCDS DB by Protein ID:ENSMUSP00000131932
Original member NCBI NM_025699.2 NP_079975.2 Updated not alive Link to Nucleotide Sequence:NM_025699.2Link to Protein Sequence:NP_079975.2Re-query CCDS DB by Nucleotide ID:NM_025699Re-query CCDS DB by Protein ID:NP_079975
Current member NCBI NM_025699.3 NP_079975.2 Accepted alive Link to Nucleotide Sequence:NM_025699.3Link to Protein Sequence:NP_079975.2Re-query CCDS DB by Nucleotide ID:NM_025699Re-query CCDS DB by Protein ID:NP_079975Link to BLAST:NP_079975.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079975.2 291 Q9D722 291 100% 0 0

Chromosomal Locations for CCDS 17009.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 163406405 163407089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163411397 163411510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163415535 163415611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGAAATCCGAAGCCAAGGATGGAGAGGAGGAAAGTCTGCAAACTGCCTTCAAGAAATTAAGAGTGGACG
CATCAGGGTCCATCATATCTCTGTCTGTTGGAGAAGGCCCAAGTGTCAGAGCATCAGCCAGAACAGCAGC
CGATGATACCAAACCGAAAACCATGTGTGCATCTAAAGACAGTTGGCATGGGTCTACAAGGAAGTCTTCA
CGAGGAGCAGTGAGAACCCAGCGTCGTAGACGGTCTAAGTCTCCTGTTCTTCATCCTCCCAAATTCATAC
ATTGCAGTACAACAGCACCTCCTTCCAGCAGCCAGCTTAAGCACAGAAGCCAGACTGAGCCACCCGATGG
CATCAGTGGACGGGGAATTTCAACACCCAAAGAGTTCAACGCAGGAGAAAACTCTACTTCTCTTGATGTT
AATCACACAGGAGCAGCCATCGAGCCTCTGAGAAGCTCGGTTCTGAGGCTCCCATCAGAGAGTAAAACAG
AAGAGCTCTCTGATGCTACCCAAGTCTCCCAAGAAAGTCTTACGGCTAACGATCTCTCTGACTTTCAATC
TGTTTCCAAGCTAAGTCAGGGCAAGCCATGTGTGTGTGTAGGCAAGGAGTGCCAGTGTAAGAGGTGGCAT
GACATGGAAGTGTATTCCTTTTCAGGTCTGCAGAATGTCCCTCCTCTGGCCCCAGAACGAAGATCACTTG
AGGACTACTCTCAGTCACTGCACACCAGAACTCTGTCTGGCTCGCCTCGATCCTGTTCCGAGCAAGCTCG
TGTCTATGTGGATGATGTGACCATTGAGGACCTAGCAGGCTACATGGAGTATTACTTGTATATCCCTAAG
AAAATGTCCCACATGGCAGAGATGATGTACACCTGA

Translation (291 aa):
MKSEAKDGEEESLQTAFKKLRVDASGSIISLSVGEGPSVRASARTAADDTKPKTMCASKDSWHGSTRKSS
RGAVRTQRRRRSKSPVLHPPKFIHCSTTAPPSSSQLKHRSQTEPPDGISGRGISTPKEFNAGENSTSLDV
NHTGAAIEPLRSSVLRLPSESKTEELSDATQVSQESLTANDLSDFQSVSKLSQGKPCVCVGKECQCKRWH
DMEVYSFSGLQNVPPLAPERRSLEDYSQSLHTRTLSGSPRSCSEQARVYVDDVTIEDLAGYMEYYLYIPK
KMSHMAEMMYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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