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Report for CCDS17115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17115.1 Public Mus musculus 2 Sall4 23 108 98 CCDS HistoryNCBI Gene:99377Re-query CCDS DB by CCDS ID:17115.1Re-query CCDS DB by GeneID:99377See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17115.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029061.11 ENSMUSP00000029061.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029061.11Link to Ensembl Protein Viewer:ENSMUSP00000029061.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029061Re-query CCDS DB by Protein ID:ENSMUSP00000029061
Original member NCBI NM_175303.4 NP_780512.2 Updated not alive Link to Nucleotide Sequence:NM_175303.4Link to Protein Sequence:NP_780512.2Re-query CCDS DB by Nucleotide ID:NM_175303Re-query CCDS DB by Protein ID:NP_780512
Current member NCBI NM_175303.5 NP_780512.2 Accepted alive Link to Nucleotide Sequence:NM_175303.5Link to Protein Sequence:NP_780512.2Re-query CCDS DB by Nucleotide ID:NM_175303Re-query CCDS DB by Protein ID:NP_780512Link to BLAST:NP_780512.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780512.2 1067 Q8BX22-1 1067 100% 0 0

Chromosomal Locations for CCDS 17115.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 168750029 168750460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168752454 168752740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168754434 168756800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168766912 168767029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3204 nt):
ATGTCGAGGCGCAAGCAGGCGAAGCCCCAGCACATCAACTGGGAGGAGGGCCAGGGCGAGCAGCCTCAGC
AG
CTACCGAGCCCCGACCTCGCCGAGGCGCTGGCGGCGGAGGAACCCGGTGCTCCAGTGAACTCCCCTGG
G
AACTGCGATGAAGCCTCAGAGGACTCCATACCGGTGAAGCGGCCCCGGCGGGAGGACACTCACATCTGC
AAC
AAATGCTGTGCCGAGTTCTTTAGTCTCTCTGAATTCATGGAACACAAGAAAAGTTGCACTAAAACCC
CT
CCTGTCCTCATCATGAATGACAGCGAGGGGCCAGTGCCTTCAGAGGACTTTTCCAGAGCTGCCCTGAG
C
CACCAGCTGGGCAGCCCAAGCAATAAAGACAGTCTCCAGGAGAACGGCAGCAGCTCGGGGGACTTGAAG
AAG
CTGGGCACGGACTCCATCCTGTACTTGAAGACAGAGGCTACCCAGCCATCCACACCCCAGGACATAA
GC
TATTTACCCAAAGGCAAAGTAGCCAACACCAATGTGACTCTGCAGGCGCTCCGCGGCACCAAGGTGGC
C
GTGAACCAACGGGGTGCAGAGGCACCCATGGCGCCCATGCCTGCTGCCCAAGGCATCCCTTGGGTCCTG
GAG
CAGATCCTGTGCCTGCAGCAGCAGCAACTCCAGCAAATCCAGCTTACGGAACAGATTCGCGTCCAGG
TG
AACATGTGGGCAGCGCACGCGCTCCACTCTGGAGTGGCGGGGGCCGACACGCTGAAGGCCTTAAGCAG
C
CATGTGTCTCAGCAAGTGTCCGTGTCCCAGCAGGTGTCGGCTGCCGTGGCCCTGCTCAGCCAGAAAGCC
TCA
AACCCAGCTCTGTCGCTCGATGCCTTGAAACAAGCCAAGCTACCTCATGCCAGCGTCCCCTCCGCAG
CC
AGCCCGTTGTCCTCGGGGTTAACGTCCTTCACCTTGAAGCCTGACGGGACACGGGTTCTCCCCAACTT
C
GTGTCTCGCCTTCCCAGTGCCCTGCTACCTCAGACTCCGGGCTCTGTGCTCCTGCAGAGTCCCTTCTCC
GCT
GTGACGCTCGACCAGTCCAAGAAAGGAAAGGGGAAACCCCAGAACCTCTCCGCCTCTGCCTCGGTGT
TA
GATGTCAAGGCCAAGGACGAAGTCGTCCTCGGTAAGCACAAGTGTAGGTACTGTCCCAAGGTTTTCGG
G
ACAGATAGCTCCCTTCAGATTCACCTTCGCTCCCACACCGGAGAGAGACCTTACGTGTGCCCTATCTGT
GGT
CACCGCTTCACCACCAAGGGCAATCTCAAGGTCCACTTACAACGACACCCTGAGGTGAAGGCAAACC
CC
CAGCTGTTGGCCGAATTCCAGGACAAAGGGGCAGTGAGTGCCGCTTCTCACTATGCACTCCCTGTCCC
C
GTCCCTGCCGATGAATCGAGTCTCTCTGTAGACGCCGAGCCTGTCCCGGTCACGGGAACCCCTTCTCTA
GGG
CTACCTCAAAAGCTCACGTCAGGGCCTAATTCCAGGGACCTCATGGGTGGCTCCTTGCCCAATGACA
TG
CAGCCAGGGCCTTCTCCAGAAAGTGAGGCGGGCCTTCCACTCCTTGGGGTGGGGATGATACATAATCC
C
CCAAAGGCTGGGGGCTTCCAGGGCACTGGGGCCCCAGAGTCAGGGTCCGAGACCCTGAAATTGCAGCAA
CTA
GTGGAGAACATAGACAAGGCCACTACTGACCCCAACGAGTGTCTCATTTGTCATCGGGTCCTCAGCT
GT
CAGAGTTCCCTGAAGATGCATTACCGTACCCACACAGGGGAGAGACCATTCCAGTGCAAGATCTGTGG
C
CGGGCCTTCTCCACCAAAGGCAACCTGAAGACACACCTTGGGGTTCACCGAACCAACACGACCGTAAAG
ACC
CAACATTCGTGCCCCATCTGCCAGAAGAAATTCACCAACGCCGTCATGTTACAGCAGCATATCCGGA
TG
CACATGGGTGGCCAGATCCCCAACACCCCTCTGCCAGAGAGTCCCTGTGACTTCACGGCTCCCGAGCC
C
GTGGCCGTCAGTGAGAATGGCAGTGCCAGCGGGGTCTGCCAGGACGACGCAGCAGAAGGGATGGAAGCC
GAG
GAGGTCTGTTCTCAGGATGTTCCCAGTGGCCCCTCAACTGTCTCTCTGCCGGTTCCCAGTGCCCACC
TG
GCATCGCCCTCTCTGGGCTTCTCTGTGTTGGCCTCCCTGGATACGCAGGGGAAAGGGGCTCTTCCGGC
G
CTGGCCCTGCAGAGGCAGAGCAGTCGAGAAAACAGCTCCCTGGAGGGCGGTGACACTGGTCCAGCCAAT
GAC
TCTTCCTTGCTCGTGGGTGACCAGGAGTGTCAGAGCCGAAGCCCAGATGCCACGGAGACCATGTGCT
AC
CAGGCAGTGTCACCTGCCAATAGCCAAGCCGGAAGTGTCAAGTCCCGGTCTCCCGAGGGTCACAAGGC
C
GAGGGCGTGGAGAGCTGCCGCGTTGACACCGAAGGTCGTACCAGCCTCCCTCCAACATTTATCCGAGCA
CAG
CCCACCTTTGTCAAAGTTGAAGTGCCTGGCACCTTTGTGGGACCCCCCAGCATGCCCTCGGGTATGC
CG
CCTTTGCTAGCATCGCAGCCGCAGCCACGCCGCCAGGCCAAGCAGCACTGCTGCACACGGTGTGGAAA
G
AACTTCTCGTCTGCCAGTGCCCTGCAGATCCACGAGCGAACACACACGGGAGAGAAGCCTTTCGTGTGT
AAC
ATATGCGGGCGGGCCTTCACCACGAAAGGCAACCTGAAGGTACACTACATGACTCATGGGGCCAACA
AT
AACTCCGCCCGCCGGGGAAGGAAGCTGGCCATAGAGAACCCCATGGCCGCGCTGAGTGCTGAGGGAAA
G
AGAGCGCCCGAGGTGTTTTCCAAGGAGCTCCTGTCCCCCGCGGTGAGTGTGGACCCCGCCTCCTGGAAC
CAG
TACACCAGCGTCCTGAATGGGGGTCTGGCCATGAAGACCAACGAGATCTCCGTGATCCAGAGCGGAG
GC
ATCCCCACGCTGCCTGTGTCGCTGGGGGCCAGCTCTGTGGTGAGCAATGGCACGATTTCCAAGCTTGA
C
GGCTCTCAGACCGGTGTGAGCATGCCCATGAGCGGGAACGGAGAAAAGCTCGCTGTTCCCGACGGCATG
GCC
AAACACCAGTTCCCTCACTTCCTGGAGGAAAATAAGATTGCTGTCAGCTAA


Translation (1067 aa):
MSRRKQAKPQHINWEEGQGEQPQQLPSPDLAEALAAEEPGAPVNSPGNCDEASEDSIPVKRPRREDTHIC
N
KCCAEFFSLSEFMEHKKSCTKTPPVLIMNDSEGPVPSEDFSRAALSHQLGSPSNKDSLQENGSSSGDLK
K
LGTDSILYLKTEATQPSTPQDISYLPKGKVANTNVTLQALRGTKVAVNQRGAEAPMAPMPAAQGIPWVL
E
QILCLQQQQLQQIQLTEQIRVQVNMWAAHALHSGVAGADTLKALSSHVSQQVSVSQQVSAAVALLSQKA
S
NPALSLDALKQAKLPHASVPSAASPLSSGLTSFTLKPDGTRVLPNFVSRLPSALLPQTPGSVLLQSPFS
A
VTLDQSKKGKGKPQNLSASASVLDVKAKDEVVLGKHKCRYCPKVFGTDSSLQIHLRSHTGERPYVCPIC
G
HRFTTKGNLKVHLQRHPEVKANPQLLAEFQDKGAVSAASHYALPVPVPADESSLSVDAEPVPVTGTPSL
G
LPQKLTSGPNSRDLMGGSLPNDMQPGPSPESEAGLPLLGVGMIHNPPKAGGFQGTGAPESGSETLKLQQ
L
VENIDKATTDPNECLICHRVLSCQSSLKMHYRTHTGERPFQCKICGRAFSTKGNLKTHLGVHRTNTTVK
T
QHSCPICQKKFTNAVMLQQHIRMHMGGQIPNTPLPESPCDFTAPEPVAVSENGSASGVCQDDAAEGMEA
E
EVCSQDVPSGPSTVSLPVPSAHLASPSLGFSVLASLDTQGKGALPALALQRQSSRENSSLEGGDTGPAN
D
SSLLVGDQECQSRSPDATETMCYQAVSPANSQAGSVKSRSPEGHKAEGVESCRVDTE
GRTSLPPTFIRA
Q
PTFVKVEVPGTFVGPPSMPSGMPPLLASQPQPRRQAKQHCCTRCGKNFSSASALQIHERTHTGEKPFVC
N
ICGRAFTTKGNLK
VHYMTHGANNNSARRGRKLAIENPMAALSAEGKRAPEVFSKELLSPAVSVDPASWN
Q
YTSVLNGGLAMKTNEISVIQSGGIPTLPVSLGASSVVSNGTISKLDGSQTGVSMPMSGNGEKLAVPDGM
A
KHQFPHFLEENKIAVS




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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