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Report for CCDS17334.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
17334.1 |
Public |
Mus musculus |
3 |
Pcdh18 |
23 |
108 |
98 |
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Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 17334.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000035931.12 |
ENSMUSP00000039245.7 |
Accepted |
alive |
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NCBI |
NM_130448.3 |
NP_569715.3 |
Updated |
not alive |
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NCBI |
NM_130448.4 |
NP_569715.3 |
Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_569715.3 |
1134 |
Q8VHR0 |
1134 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 17334.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3405 nt): ATGCACCAAATGAATACTAAAATGCACTTTAGATTTGCACTTGCACTTCTGATGGCGTTTTTCAGCCACG ATGTCCTGGCTAAGAATCTGAAATACAGGATTTATGAGGAGCAGAGGGTCGGATCGGTAATTGCTAGACT ATCAGAAGATGTGGCTGATGTTTTATTGAAGCTACCAAATCCTTCTGCTGTTCGTTTTCGAGCCATGCCA CGGGGGAATTCTCCTCTCCTGGTCGTAAATGAGAATACCGGAGAAATCAGCATAGGGGCTAAAATTGACC GCGAGCAACTATGCCAAAAAAACTTGAACTGTTCGATAGAGTTTGATGTGCTCACTCTGCCGACCGAGCA TCTGCAGCTGTTCCACATTGAAGTGGACGTGCTGGACATTAATGACAATTCCCCCCAATTCTCGAGACCC GTCATTCCCATTGAGATATCGGAGAGCGCAGCAGTTGGGACTCGTATCCCCCTGGACAGTGCGTTCGACC CAGATGTTGGGGAAAATTCCCTCCACACCTACTCGCTCTCTGCTAATGATTATTTTAATATCGAAGTGCG AACCAGGACAGACGGGGCCAAGTACGCTGAACTCATAGTGGTGAAAGAGTTGGATCGGGAGCTGAAGGCT AGCTACGAGCTTCAGCTCACCGCCTCCGACATGGGAGTGCCTCAGAGGTCTGGCTCCTCCATCCTGAAAA TCAGCATTTCGGATTCCAACGACAACAGCCCGGCCTTTGAGCAGCCTTCTTACACAATACAACTCTTAGA AAACTCCCCAGTTGGAACCTTGCTCCTTGATCTAAATGCCACCGATCCAGATGAGGGCGCTAATGGGAGA ATTGTGTATTCTTTCAGCAGTCATGTGTCTCCCAAAATTATAGAGACTTTTAAGATCGACTCAGAAAAAG GCCACTTGACTCTTTTCAAGCCAGTGGATTATGAAATCACCAAGTCCTATGAGATAGACGTTCAAGCCCA AGATTTGGGTCCCAATTCCATTCCTGCTCATTGCAAAATTATAATTAAGGTTGTGGATGTCAATGACAAT AAACCTGAAATTAGCATAAATCTCATGTCCCCTGGAAAAGAAGAAGTATCTTATGTCTTTGAAGGGGATC CCATTGATACATTCGTTGCTATCGTCAGGGTTCAAGACAAGGATTCTGGGCTGAATGGGGAAATAATCTG TAAGCTTCATGGGCATGGACATTTTAAACTTCAGAAGACATATGAAAATAACTACTTGATCTTGACCAAT GCCACTCTGGATAGAGAAAAGAGATCTGAGTATAGTTTGACTGTGATTGCTGAGGACAAGGGAACACCAA GCCTCTCCTCAGTGAGACATTTTACTGTTCAAATCAATGACATAAATGACAATCCACCTCGCTTCCAGAG GAGCCGATATGAATTTGTCATCTCAGAGAATAATTCACCAGGGGCGTATATCACCACAGTTACAGCCACT GATCCAGATCTTGGTGAAAACGGACATGTGACATACACCATTTTGGAGAGTTTTGTCTTGGGAAGTTCCA TCACCACGTATGTAACCATTGACCCCTCTAATGGCGCCATCTATGCCCTCAGGATCTTTGATCATGAAGA AGTGAGTCAGATCACTTTTGTGGTGGAAGCCAGGGATGGAGGGAGTCAGAAGCAACTCTCCAGCAACACC ACCGTTGTGCTGACCATCATTGATGAGAATGACAATGTCCCTGTGGTTATAGGGCCTGCAATGCACAATA ATACTGCAGAAATATCCATCCCCAAAGGAGCTGAAAGTGGTTTTCATGTCACAAGAATAAGGGTGGTCGA CAGGGACTCTGGTGCCAATGCTGAATTCAGCTGCTCCATAGTATCTGGTAATGAGGAAAACATCTTTATC ATGGACCCTAGGTCATGTGACATTCATACCAACGTCAGCATGGAATCCATTCCCTCTGCGGAATGGGCAC TCTCAGTTATCATCCAGGACAAGGGCAGTCCTCCTCTGCACACCAAAGTCCTTCTGAGGTGCATGGTCTT TGACTATGCAGAATCTGTGACAAGCACAGCCATGACCTCTGTCAGCCGCGCATCCTTGGATGTGTCCATG ATCATAATTATTTCCTTGGGAGCAATTTGTGCTGTGTTGCTGGTTATTATGGTCCTGTTTGCAACGAGGT GTAATAGAGAAAAGAAAGACACCAGATCCTACAACTGCAGGGTGGCAGAATCCACGTACCAGCATCATCC TAAAAGGCCATCCAGGCAGATTCACAAAGGAGACATCACACTGGTACCCACCATCAATGGCACTCTGCCC ATCAGATCTCACCACAGATCCTCCCCATCTTCATCCCCAACCTTGGAGAGGGGACAAATGGGCAGCCGCC AGAGTCACAACAGTCACCAGTCACTCAACAGTTTGGTGACCATCTCATCAAACCACGTGCCAGAGAATTT TTCATTAGAACTCACCCACGCCACTCCTGCTGTTGAGGTCTCGCAGCTTCTCTCCATGCTTCACCAGGGG CAATATCAGCCACGGCCAAGTTTTCGAGGAAACAAATATTCCAGGAGCTATAGATATGCCCTTCAAGACA TGGATAAATTTAGCCTGAAAGACAGTGGCCGTGGAGATAGCGAAGCAGGAGATAGCGATTATGATTTGGG GCGCGATTCTCCGATAGACAGGCTCCTGGGAGAAGGATTCAGTGACCTCTTCCTCACGGACGGGAGAATT CCAGCAGCAATGAGGCTATGTACGGAGGAGTGCAGAGTCCTGGGCCACTCTGACCAGTGCTGGATGCCCC CGCTGCCCTCGCCATCCTCTGACTACAGAAGCAACATGTTCATCCCCGGAGAAGAATTCCCAGCTCAACC TCAGCAACAGCATTCTCATCAGGGCCTTGATGATGACAGCCAGCCTGCAGAAAACGGGGAGAAAAAAAAG AGCTTCTCCACTTTTGGGAAGGACTCCCCTAGCGACGAGGATTCGGGAGACTCTAGCACATCATCTCTGC TATCAGAAATGAGCAGTGTGTTCCAGCGCCTTCTCCCCGCATCCCTAGATACCTTTTCTGAATGCAACGA AGGGGATCGCTCCAACTCTCTGGAACGTCGAAAGGGTCCGGCACAGGGCAAAACTGGGGGTTACCCACAA GGGGTTGCGGCCTGGGCAGCCAGCACACATTTTCAGAACCCCACCAGCAGCTCTGGGACCCCTCTGGGGA CTCACTCTAGTGTGCAGCCTTCCTCCAAGTGGCTGCCAGCTATGGAGGAGATTCCTGAAAATTACGAGGA AGATGATTTTGACAATGTGCTTAACCATCTCAGCGATGGGAAACACGAACTCATGGATGCCAGCGAGCTG GTGGCTGAGATCAACAAACTGCTTCAAGACGTCCGCCAGAGCTAG
Translation (1134 aa): MHQMNTKMHFRFALALLMAFFSHDVLAKNLKYRIYEEQRVGSVIARLSEDVADVLLKLPNPSAVRFRAMP RGNSPLLVVNENTGEISIGAKIDREQLCQKNLNCSIEFDVLTLPTEHLQLFHIEVDVLDINDNSPQFSRP VIPIEISESAAVGTRIPLDSAFDPDVGENSLHTYSLSANDYFNIEVRTRTDGAKYAELIVVKELDRELKA SYELQLTASDMGVPQRSGSSILKISISDSNDNSPAFEQPSYTIQLLENSPVGTLLLDLNATDPDEGANGR IVYSFSSHVSPKIIETFKIDSEKGHLTLFKPVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDN KPEISINLMSPGKEEVSYVFEGDPIDTFVAIVRVQDKDSGLNGEIICKLHGHGHFKLQKTYENNYLILTN ATLDREKRSEYSLTVIAEDKGTPSLSSVRHFTVQINDINDNPPRFQRSRYEFVISENNSPGAYITTVTAT DPDLGENGHVTYTILESFVLGSSITTYVTIDPSNGAIYALRIFDHEEVSQITFVVEARDGGSQKQLSSNT TVVLTIIDENDNVPVVIGPAMHNNTAEISIPKGAESGFHVTRIRVVDRDSGANAEFSCSIVSGNEENIFI MDPRSCDIHTNVSMESIPSAEWALSVIIQDKGSPPLHTKVLLRCMVFDYAESVTSTAMTSVSRASLDVSM IIIISLGAICAVLLVIMVLFATRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLP IRSHHRSSPSSSPTLERGQMGSRQSHNSHQSLNSLVTISSNHVPENFSLELTHATPAVEVSQLLSMLHQG QYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEGFSDLFLTDGRI PAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEFPAQPQQQHSHQGLDDDSQPAENGEKKK SFSTFGKDSPSDEDSGDSSTSSLLSEMSSVFQRLLPASLDTFSECNEGDRSNSLERRKGPAQGKTGGYPQ GVAAWAASTHFQNPTSSSGTPLGTHSSVQPSSKWLPAMEEIPENYEEDDFDNVLNHLSDGKHELMDASEL VAEINKLLQDVRQS
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