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Report for CCDS17370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17370.1 Public Mus musculus 3 Gpr171 23 108 98 CCDS HistoryNCBI Gene:229323Re-query CCDS DB by CCDS ID:17370.1Re-query CCDS DB by GeneID:229323See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17370.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085040.4 ENSMUSP00000082115.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085040.4Link to Ensembl Protein Viewer:ENSMUSP00000082115.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000085040Re-query CCDS DB by Protein ID:ENSMUSP00000082115
Original member Current member NCBI NM_173398.3 NP_775574.1 Accepted alive Link to Nucleotide Sequence:NM_173398.3Link to Protein Sequence:NP_775574.1Re-query CCDS DB by Nucleotide ID:NM_173398Re-query CCDS DB by Protein ID:NP_775574Link to BLAST:NP_775574.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775574.1 319 Q8BG55 319 100% 0 0

Chromosomal Locations for CCDS 17370.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 59097393 59098352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGACAAACAGTTCAACGTTCTGTCCGGTTTACAGAGATCTGGAACCATTTACCTATTTTTTTTATTTAG
TTTTCCTCATTGGAATTATTGGAAGTTGTTTTGCCACGTGGGCTTTTATACAGAAAACCACAAATCACAG
ATGTGTCAGCATATACTTAATTAATTTGCTTACAGCTGATTTCCTGCTCACCCTGGCATTACCAGTAAAA
ATCATTGTTGACTTGGGTGTGGCACCCTGGAAGCTAAGGATATTCCACTGCCAAGTGACAGCCTGCCTCA
TCTACATCAATATGTACTTATCTATTATCTTCTTAGCCTTTGTCAGCATCGATCGCTGTCTTCAGTTAAT
ACACAGCTGCAAGATATACCGAATACAAGAACCTGGGTTTGCCAAAATGATATCAGCTGTCGTGTGGCTC
ATGGTCCTGCTGATCATGGTGCCGAACATGGTGATTCCCATCAAGGACATCAAAGAAAAGTCAAATGTAG
GTTGCATGGAGTTTAAAAAGGAGTTTGGAAGAAACTGGCATTTGCTAACAAACTTCATCTGTGTGGCAAT
ATTTTTAAATTTCTCAGTCATCATTTTGATATCCAACTTCCTTGCAATCAGACAACTCTATAGAAATAGA
GACAACACAAACTATCCAAGTGTGAAATCAGCTCTGCTCCACATTCTCTTGGTGACAGCTAGTTACATCA
TATGCTTTGTTCCCTACCACGCTGTCAGGATCCCATACACCCTCAGCCAGACAGAGGTCATATCTGATTG
CTCAACTAGGATCGCACTCTTCAAAGCCAAAGAGGCCACACTGCTGCTGGCGGTGTCTAATTTGTGTTTT
GATCCAATCCTGTACTATCATCTGTCAAAAGCCTTTCGACTAAAGGTCACCGAGACTTTCGCCTCACCTA
AAAAGAGCAAGCCTCTGGAAGAAAGATTGAGAAGTGAGAATGATGTGTAA

Translation (319 aa):
MTNSSTFCPVYRDLEPFTYFFYLVFLIGIIGSCFATWAFIQKTTNHRCVSIYLINLLTADFLLTLALPVK
IIVDLGVAPWKLRIFHCQVTACLIYINMYLSIIFLAFVSIDRCLQLIHSCKIYRIQEPGFAKMISAVVWL
MVLLIMVPNMVIPIKDIKEKSNVGCMEFKKEFGRNWHLLTNFICVAIFLNFSVIILISNFLAIRQLYRNR
DNTNYPSVKSALLHILLVTASYIICFVPYHAVRIPYTLSQTEVISDCSTRIALFKAKEATLLLAVSNLCF
DPILYYHLSKAFRLKVTETFASPKKSKPLEERLRSENDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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