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Report for CCDS17423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17423.1 Public Mus musculus 3 Gria2 23 108 98 CCDS HistoryNCBI Gene:14800Re-query CCDS DB by CCDS ID:17423.1Re-query CCDS DB by GeneID:14800See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17423.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075316.9 ENSMUSP00000074787.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075316.9Link to Ensembl Protein Viewer:ENSMUSP00000074787.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000075316Re-query CCDS DB by Protein ID:ENSMUSP00000074787
Original member NCBI NM_013540.3 NP_038568.2 Updated not alive Link to Nucleotide Sequence:NM_013540.3Link to Protein Sequence:NP_038568.2Re-query CCDS DB by Nucleotide ID:NM_013540Re-query CCDS DB by Protein ID:NP_038568
Current member NCBI NM_013540.4 NP_038568.3 Accepted alive Link to Nucleotide Sequence:NM_013540.4Link to Protein Sequence:NP_038568.3Re-query CCDS DB by Nucleotide ID:NM_013540Re-query CCDS DB by Protein ID:NP_038568Link to BLAST:NP_038568.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038568.3 883 P23819-1 883 99.8867% 0 1

Chromosomal Locations for CCDS 17423.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 80689106 80689351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 80691320 80691434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 80692285 80692532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 80702458 80702656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 80706888 80707258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 80707699 80707905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 80709378 80709488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 80710290 80710394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 80710677 80710844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 80722032 80722193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 80726832 80726885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 80732038 80732234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 80740959 80741198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 80801645 80801785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 80802297 80802384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2652 nt):
ATGCAAAAGATTATGCATATTTCTGTCCTCCTTTCTCCTGTTTTATGGGGACTGATTTTTGGTGTCTCTT
CT
AACAGCATACAGATAGGGGGGCTATTTCCAAGGGGCGCTGATCAAGAATACAGTGCATTTCGGGTAGG
G
ATGGTTCAGTTTTCCACTTCGGAGTTCAGACTGACACCCCATATCGACAATTTGGAGGTAGCCAACAGT
TTC
GCAGTCACCAATGCTTTCTGCTCCCAGTTTTCAAGAGGCGTCTATGCGATTTTTGGGTTTTACGACA
AG
AAGTCTGTAAATACCATCACATCATTCTGTGGGACACTGCATGTATCCTTCATCACACCAAGCTTCCC
A
ACAGATGGCACGCATCCATTTGTCATCCAGATGCGACCTGACCTCAAAGGAGCACTCCTTAGCTTGATT
GAG
TACTACCAATGGGATAAGTTCGCATACCTCTATGACAGTGACAGAGGCTTATCAACACTGCAAGCTG
TG
CTGGATTCTGCTGCGGAGAAGAAGTGGCAGGTGACTGCTATCAATGTGGGGAACATTAACAATGACAA
G
AAAGATGAGACCTACAGATCACTCTTTCAAGATCTGGAGTTAAAAAAAGAACGGCGTGTAATCCTTGAC
TGC
GAAAGGGATAAAGTCAATGACATTGTGGACCAGGTTATTACCATTGGAAAGCATGTTAAAGGGTACC
AT
TATATCATTGCAAATCTGGGATTTACTGATGGAGACCTGCTGAAAATTCAGTTTGGAGGAGCAAATGT
C
TCTGGATTTCAGATTGTAGACTACGACGACTCCCTGGTGTCTAAATTTATAGAAAGATGGTCAACACTC
GAA
GAGAAAGAATACCCTGGAGCACACACAGCGACAATTAAGTATACTTCGGCCCTGACTTATGATGCTG
TC
CAAGTGATGACTGAAGCATTCCGCAATCTTCGGAAGCAGAGGATTGAAATCTCCAGGAGAGGAAATGC
A
GGAGATTGTTTGGCCAACCCAGCTGTGCCTTGGGGACAAGGCGTGGAAATAGAAAGGGCCCTCAAGCAG
GTT
CAAGTTGAAGGTCTCTCTGGAAATATAAAATTTGACCAGAACGGAAAACGAATAAACTACACAATTA
AC
ATCATGGAGCTCAAAACAAATGGACCCCGGAAGATTGGGTACTGGAGTGAAGTGGATAAAATGGTTGT
C
ACCCTAACCGAGCTCCCCTCTGGAAATGACACATCTGGGCTTGAAAACAAAACTGTGGTTGTCACCACA
ATA
TTGGAATCTCCATATGTTATGATGAAGAAAAATCATGAAATGCTTGAAGGGAATGAGCGTTATGAGG
GC
TACTGTGTTGACTTAGCTGCAGAAATTGCCAAACATTGTGGATTCAAGTACAAGCTGACTATTGTTGG
G
GATGGCAAGTATGGGGCCAGGGATGCAGACACCAAAATTTGGAATGGTATGGTTGGAGAACTTGTATAT
GGG
AAAGCTGATATTGCCATTGCTCCATTAACTATCACTCTCGTGAGAGAAGAGGTGATTGACTTCTCGA
AG
CCATTCATGAGCCTTGGAATCTCTATCATGATCAAGAAGCCTCAGAAGTCCAAACCAGGAGTGTTTTC
C
TTTCTTGATCCTTTAGCCTATGAGATCTGGATGTGCATTGTGTTTGCCTACATTGGGGTCAGTGTAGTT
TTA
TTCCTGGTCAGCAGATTTAGCCCCTACGAGTGGCACACTGAGGAATTTGAAGATGGAAGAGAAACAC
AA
AGTAGTGAATCAACTAATGAATTTGGGATTTTTAATAGTCTCTGGTTTTCCTTGGGTGCCTTTATGCA
G
CAAGGATGCGATATTTCGCCAAGATCTCTCTCTGGGCGCATTGTTGGAGGTGTGTGGTGGTTCTTTACC
CTC
ATCATCATCTCCTCCTACACGGCTAACTTAGCTGCCTTCCTGACTGTAGAGAGGATGGTGTCGCCCA
TC
GAAAGTGCTGAGGATCTGTCTAAGCAAACAGAAATTGCTTATGGAACATTAGACTCTGGCTCCACTAA
A
GAGTTTTTCAGGAGATCTAAAATTGCAGTGTTTGATAAAATGTGGACTTATATGAGGAGTGCAGAGCCC
TCT
GTGTTTGTGAGGACTACGGCAGAAGGAGTAGCCAGAGTCAGGAAATCCAAAGGGAAGTATGCCTACT
TG
CTGGAGTCCACAATGAATGAGTACATCGAGCAGAGGAAGCCTTGCGACACCATGAAAGTGGGCGGCAA
C
CTGGATTCCAAAGGCTACGGCATCGCCACACCTAAAGGATCCTCATTAAGAAATGCGGTTAACCTCGCA
GTA
CTAAAACTGAATGAACAAGGCCTGTTGGACAAATTGAAAAACAAATGGTGGTACGACAAAGGAGAGT
GC
GGCAGCGGGGGAGGTGATTCCAAGGAAAAGACCAGTGCCCTCAGTCTGAGCAACGTTGCTGGAGTATT
C
TACATCCTTGTCGGGGGCCTTGGTTTGGCAATGCTGGTGGCTTTGATTGAGTTCTGTTACAAGTCAAGG
GCC
GAGGCGAAACGAATGAAGGTGGCAAAGAATGCACAGAATATTAACCCATCTTCCTCGCAGAATTCCC
AG
AATTTTGCAACTTATAAGGAAGGTTACAACGTATATGGCATCGAGAGTGTTAAAATTTAG


Translation (883 aa):
MQKIMHISVLLSPVLWGLIFGVSSNSIQIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANS
F
AVTNA
FCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLI
E
YYQWDKFAYLYDSDR
GLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILD
C
ERDKVNDIVDQ
VITIGKHVKGYHYIIANLGFTDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTL
E
EKEYPGAHTATIK
YTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQ
V
QVEGLSGNIKFDQNGKRINYTINIMELKTNGPRK
IGYWSEVDKMVVTLTELPSGNDTSGLENKTVVVTT
I
L
ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVY
G
KADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVV
L
FLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGCDISP
RSLSGRIVGGVWWFFT
L
IIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFR
RSKIAVFDKMWTYMRSAEP
S
VFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSL
RNAVNLA
V
LKLNEQGLLDKLKNKWWYDKGECGSGGGDSK
EKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSR
A
EAKRMKVAKNAQNINPSSSQNSQNFATYKEGYNVYGIESVKI




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser