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Report for CCDS17446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17446.1 Public Mus musculus 3 Rps3a1 23 108 98 CCDS HistoryNCBI Gene:20091Re-query CCDS DB by CCDS ID:17446.1Re-query CCDS DB by GeneID:20091See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17446.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029722.6 ENSMUSP00000029722.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029722.6Link to Ensembl Protein Viewer:ENSMUSP00000029722.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029722Re-query CCDS DB by Protein ID:ENSMUSP00000029722
Original member Current member NCBI NM_016959.4 NP_058655.3 Accepted alive Link to Nucleotide Sequence:NM_016959.4Link to Protein Sequence:NP_058655.3Re-query CCDS DB by Nucleotide ID:NM_016959Re-query CCDS DB by Protein ID:NP_058655Link to BLAST:NP_058655.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058655.3 264 P97351 264 100% 0 0

Chromosomal Locations for CCDS 17446.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 86137989 86138110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 86138483 86138592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 86139040 86139248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 86141239 86141426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 86141698 86141801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 86142508 86142569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGGCGGTCGGCAAGAACAAGCGCCTGACGAAAGGTGGCAAGAAGGGAGCTAAGAAGAAAGTGGTCGATC
CATTTTCTAAGAAAGACTGGTACGATGTGAAAGCTCCAGCCATGTTCAATATTAGGAACATCGGGAAGAC
ACTAGTCACGAGGACTCAAGGAACCAAAATTGCCTCTGATGGCCTCAAGGGTCGTGTGTTTGAAGTGAGC
CTTGCTGATCTACAGAATGATGAAGTTGCGTTTAGAAAATTCAAGCTAATCACTGAGGACGTTCAGGGCA
AAAACTGTCTGACTAACTTCCATGGTATGGATCTTACCCGGGACAAAATGTGCTCCATGGTCAAGAAGTG
GCAGACCATGATCGAAGCTCACGTTGATGTCAAGACGACCGATGGGTATTTGCTCCGACTTTTCTGTGTT
GGCTTCACTAAGAAACGCAACAACCAGATAAGAAAGACATCCTATGCGCAGCACCAGCAAGTCCGCCAGA
TCCGGAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACTAATGACTTGAAGGAAGTAGTTAATAA
ACTGATTCCAGACAGCATTGGGAAAGACATAGAAAAGGCTTGCCAGTCCATTTATCCTCTCCATGACGTC
TTTGTTAGAAAAGTAAAAATGCTGAAGAAACCCAAGTTTGAATTGGGCAAGCTCATGGAGCTGCATGGGG
AAGGCGGCAGCTCTGGCAAAGCAGCTGGAGACGAGACGGGTGCTAAGGTTGAGCGAGCTGACGGATATGA
ACCGCCAGTCCAAGAATCAGTGTAA

Translation (264 aa):
MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS
LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV
GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV
FVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYEPPVQESV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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