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Report for CCDS17471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17471.1 Public Mus musculus 3 Paqr6 23 108 98 CCDS HistoryNCBI Gene:68957Re-query CCDS DB by CCDS ID:17471.1Re-query CCDS DB by GeneID:68957See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17471.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000147991.1 ENSMUSP00000114166.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147991.1Link to Ensembl Protein Viewer:ENSMUSP00000114166.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000147991Re-query CCDS DB by Protein ID:ENSMUSP00000114166
Original member Current member NCBI NM_198410.3 NP_940802.1 Accepted alive Link to Nucleotide Sequence:NM_198410.3Link to Protein Sequence:NP_940802.1Re-query CCDS DB by Nucleotide ID:NM_198410Re-query CCDS DB by Protein ID:NP_940802Link to BLAST:NP_940802.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940802.1 343 Q6TCG5 343 100% 0 0

Chromosomal Locations for CCDS 17471.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88365053 88365103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88365675 88365802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88365882 88366084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88366160 88366286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88366905 88367001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88367219 88367369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88367689 88367963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGCTCAGTCTCAAGATGCCTCAACTCCTTCGAGTCCATCAGGTCCCCCGGGTGTTTTGGGAAGAAGGCA
TCATGTCTGGCTACCGATGCCCCACAAGCTCTGCCTTAGACTGTGTTCTCAGCTCCTTCCAGATGACTAA
TGAGACGGTCAACATCTGGACTCACTTCCTGCCCACCTGGTACTTCCTGTGGCGCCTCCTGGCGTTAGGC
AGCCCGGGCTTTCGCGCGGACCCATACCACCTACCGCTGCTGGTCTTCCTACTGCCCGCCTGCCTCTATC
CCTTCGCATCCTGCTGTGCGCACACCTTTAGCTCCATGTCGCCTCGTGCTCGTCACATCTGCTACTTCCT
GGACTACGGGGCGCTCAGCCTCTACAGCCTGGGCTGCGCCTTCCCCTATGCCGCCTACTCCATGCCGGCC
TCCTGGCTGCACAGCCGCCTACACCAGCTCTTCGTGCCCGCTGCTGCGCTCAACTCTTTCCTGTGCACCG
GCCTCTCCTGCTACTCGCGGTTCCCAGAGCTAGAATACCCCGGGTTCAGCAAGGCTCTCCGCACGGCTGC
CTTTGCCTACCCCTTCTTGTTTGACAACCTCCCACTGTTCTACAGGCTGCGGCTGTGTTGGGGCGGGGCC
CACAGCTGTGGGCGGGACGCGCTGAGCTCCAACCATGGTTACCACCTCCTCTGCGCTCTGCTCTCAGGCT
TCCTTTTTGCAGCCCGTCTACCAGAGCGCCTGGCACCTGGGCGCTTCGACTATATTGGCCACAGCCACCA
GCTGTTCCATATCTGTGCCGTGCTGGGCACCCACTTCCAGCTGGAAGCGGTGCTGGCTGATATGGGATCC
CGCAGAGCCTGGCTGGCCGTGCAGGAGCCCACCCTGGGTCTGGGGGCCACTGTAGCCACCTTGAGCCTGG
CAGTGATTGGGAACCTGTTTATCATTGCTGCTTTCACGGCCTCCTTGCTGCGGATGCCTGGACCCTGCCC
CCTGCTGCAGGGTAGCCCACTGGAAGAGGGACTCCAAGCTAAACAACAGTAA

Translation (343 aa):
MLSLKMPQLLRVHQVPRVFWEEGIMSGYRCPTSSALDCVLSSFQMTNETVNIWTHFLPTWYFLWRLLALG
SPGFRADPYHLPLLVFLLPACLYPFASCCAHTFSSMSPRARHICYFLDYGALSLYSLGCAFPYAAYSMPA
SWLHSRLHQLFVPAAALNSFLCTGLSCYSRFPELEYPGFSKALRTAAFAYPFLFDNLPLFYRLRLCWGGA
HSCGRDALSSNHGYHLLCALLSGFLFAARLPERLAPGRFDYIGHSHQLFHICAVLGTHFQLEAVLADMGS
RRAWLAVQEPTLGLGATVATLSLAVIGNLFIIAAFTASLLRMPGPCPLLQGSPLEEGLQAKQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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