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Report for CCDS17488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17488.1 Public Mus musculus 3 Fdps 23 108 98 CCDS HistoryNCBI Gene:110196Re-query CCDS DB by CCDS ID:17488.1Re-query CCDS DB by GeneID:110196See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081848.12 ENSMUSP00000080531.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081848.12Link to Ensembl Protein Viewer:ENSMUSP00000080531.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000081848Re-query CCDS DB by Protein ID:ENSMUSP00000080531
Original member Current member EBI ENSMUST00000196709.4 ENSMUSP00000142770.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196709.4Link to Ensembl Protein Viewer:ENSMUSP00000142770.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196709Re-query CCDS DB by Protein ID:ENSMUSP00000142770
Original member Current member NCBI NM_134469.4 NP_608219.1 Accepted alive Link to Nucleotide Sequence:NM_134469.4Link to Protein Sequence:NP_608219.1Re-query CCDS DB by Nucleotide ID:NM_134469Re-query CCDS DB by Protein ID:NP_608219Link to BLAST:NP_608219.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_608219.1 353 Q920E5 353 100% 0 0

Chromosomal Locations for CCDS 17488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89093643 89093843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89094231 89094365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89094452 89094529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89094860 89094932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89095014 89095102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89095354 89095476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89095599 89095679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89099300 89099440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89100669 89100809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGAATGGGAACCAGAAATTGGATGCTTATAACCAAGAAAAGCAGAATTTCATCCAGCACTTCTCCCAGA
TCGTCAAGGTGCTGACTGAGAAGGAGCTGGGACACCCAGAGATAGGGGATGCTATTGCCCGGCTCAAGGA
GGTCCTAGAGTACAATGCCTTAGGAGGCAAGTACAACCGGGGTTTGACCGTGGTACAAGCCTTCCAGGAG
CTGGTGGAGCCGAAGAAACAGGATGCTGAGAGTCTTCAGCGGGCCCTGACAGTGGGCTGGTGTGTAGAAC
TGCTCCAGGCTTTCTTCCTTGTGTCAGATGACATCATGGACTCTTCCCTCACTCGCCGGGGACAGATCTG
CTGGTATCAGAAGCCAGGCATAGGCTTGGATGCCATCAACGACGCTCTGCTTCTGGAAGCCTCCATCTAT
CGTTTGCTGAAGTTCTACTGCAGGGAGCAGCCCTACTACCTGAACCTGCTGGAGCTCTTTCTGCAGAGTT
CCTATCAGACAGAGATCGGGCAGACTCTAGACCTCATGACAGCACCCCAGGGCCATGTGGATCTTGGTAG
ATACACTGAAAAGAGGTACAAATCGATTGTCAAGTACAAGACGGCTTTCTACTCTTTCTACCTGCCTATT
GCGGCCGCCATGTACATGGCAGGCATTGATGGGGAGAAGGAACACGCCAATGCCCTGAAGATCCTGATGG
AGATGGGCGAGTTCTTCCAGGTCCAGGACGACTACCTTGATCTCTTTGGAGACCCCAGTGTGACGGGAAA
GGTCGGCACTGACATCCAGGACAACAAATGCAGCTGGCTGGTGGTTCAGTGTCTGCTACGAGCCTCTCCT
CAACAGCGCCAGATCTTAGAGGAGAATTATGGGCAGAAGGACCCAGAAAAAGTGGCTCGGGTGAAAGCAC
TGTATGAGGCGCTGGATCTGCAGTCTGCTTTCTTCAAGTATGAGGAAGACAGTTACAACCGCCTCAAGAG
TCTCATAGAGCAGTGCTCTGCGCCCCTGCCCCCATCCATCTTCATGGAACTTGCAAACAAGATCTACAAA
CGGAGAAAGTGA

Translation (353 aa):
MNGNQKLDAYNQEKQNFIQHFSQIVKVLTEKELGHPEIGDAIARLKEVLEYNALGGKYNRGLTVVQAFQE
LVEPKKQDAESLQRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIY
RLLKFYCREQPYYLNLLELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTAFYSFYLPI
AAAMYMAGIDGEKEHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLRASP
QQRQILEENYGQKDPEKVARVKALYEALDLQSAFFKYEEDSYNRLKSLIEQCSAPLPPSIFMELANKIYK
RRK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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