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Report for CCDS1754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1754.1 Public Homo sapiens 2 KRTCAP3 24 110 108 CCDS HistoryNCBI Gene:200634Re-query CCDS DB by CCDS ID:1754.1Re-query CCDS DB by GeneID:200634See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1754.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000288873.7 ENSP00000288873.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000288873.7Link to Ensembl Protein Viewer:ENSP00000288873.3Re-query CCDS DB by Nucleotide ID:ENST00000288873Re-query CCDS DB by Protein ID:ENSP00000288873
Original member Current member EBI ENST00000543753.5 ENSP00000442400.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543753.5Link to Ensembl Protein Viewer:ENSP00000442400.1Re-query CCDS DB by Nucleotide ID:ENST00000543753Re-query CCDS DB by Protein ID:ENSP00000442400
Original member Current member NCBI NM_001168364.2 NP_001161836.1 Accepted alive Link to Nucleotide Sequence:NM_001168364.2Link to Protein Sequence:NP_001161836.1Re-query CCDS DB by Nucleotide ID:NM_001168364Re-query CCDS DB by Protein ID:NP_001161836Link to BLAST:NP_001161836.1
Original member Current member NCBI NM_001321325.2 NP_001308254.1 Accepted alive Link to Nucleotide Sequence:NM_001321325.2Link to Protein Sequence:NP_001308254.1Re-query CCDS DB by Nucleotide ID:NM_001321325Re-query CCDS DB by Protein ID:NP_001308254Link to BLAST:NP_001308254.1
Original member Current member NCBI NM_173853.4 NP_776252.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173853.4Link to Protein Sequence:NP_776252.2Re-query CCDS DB by Nucleotide ID:NM_173853Re-query CCDS DB by Protein ID:NP_776252Link to BLAST:NP_776252.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161836.1 240 Q53RY4-1 240 100% 0 0
NP_001308254.1 240 Q53RY4-1 240 100% 0 0
NP_776252.2 240 Q53RY4-1 240 100% 0 0

Chromosomal Locations for CCDS 1754.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27442413 27442440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27442579 27442763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27442842 27442901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27443074 27443280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27443398 27443532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27443949 27444056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGAGGCGCTGCAGTCTCTGCGCTTTCGACGCCGCCCGGGGGCCCAGGCGGCTGATGCGTGTGGGCCTCG
CGCTGATCTTGGTGGGCCACGTGAACCTGCTGCTGGGGGCCGTGCTGCATGGCACCGTCCTGCGGCACGT
GGCCAATCCCCGCGGCGCTGTCACGCCGGAGTACACCGTAGCCAATGTCATCTCTGTCGGCTCGGGGCTG
CTGAGCGTTTCCGTGGGACTTGTGGCCCTCCTGGCGTCCAGGAACCTTCTTCGCCCTCCACTGCACTGGG
TCCTGCTGGCACTAGCTCTGGTGAACCTGCTCTTGTCCGTTGCCTGCTCCCTGGGCCTCCTTCTTGCTGT
GTCACTCACTGTGGCCAACGGTGGCCGCCGCCTTATTGCTGACTGCCACCCAGGACTGCTGGATCCTCTG
GTACCACTGGATGAGGGGCCGGGACATACTGACTGCCCCTTTGACCCCACAAGAATCTATGATACAGCCT
TGGCTCTCTGGATCCCTTCTTTGCTCATGTCTGCAGGGGAGGCTGCTCTATCTGGTTACTGCTGTGTGGC
TGCACTCACTCTACGTGGAGTTGGGCCCTGCAGGAAGGACGGACTTCAGGGGCAGCTAGAGGAAATGACA
GAGCTTGAATCTCCTAAATGTAAAAGGCAGGAAAATGAGCAGCTACTGGATCAAAATCAAGAAATCCGGG
CATCACAGAGAAGTTGGGTTTAG

Translation (240 aa):
MRRCSLCAFDAARGPRRLMRVGLALILVGHVNLLLGAVLHGTVLRHVANPRGAVTPEYTVANVISVGSGL
LSVSVGLVALLASRNLLRPPLHWVLLALALVNLLLSVACSLGLLLAVSLTVANGGRRLIADCHPGLLDPL
VPLDEGPGHTDCPFDPTRIYDTALALWIPSLLMSAGEAALSGYCCVAALTLRGVGPCRKDGLQGQLEEMT
ELESPKCKRQENEQLLDQNQEIRASQRSWV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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