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Report for CCDS17546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17546.1 Public Mus musculus 3 Loricrin 23 108 98 CCDS HistoryNCBI Gene:16939Re-query CCDS DB by CCDS ID:17546.1Re-query CCDS DB by GeneID:16939See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17546.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058150.7 ENSMUSP00000052128.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058150.7Link to Ensembl Protein Viewer:ENSMUSP00000052128.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000058150Re-query CCDS DB by Protein ID:ENSMUSP00000052128
Original member NCBI NM_008508.2 NP_032534.2 Updated not alive Link to Nucleotide Sequence:NM_008508.2Link to Protein Sequence:NP_032534.2Re-query CCDS DB by Nucleotide ID:NM_008508Re-query CCDS DB by Protein ID:NP_032534
Current member NCBI NM_008508.3 NP_032534.2 Accepted alive Link to Nucleotide Sequence:NM_008508.3Link to Protein Sequence:NP_032534.2Re-query CCDS DB by Nucleotide ID:NM_008508Re-query CCDS DB by Protein ID:NP_032534Link to BLAST:NP_032534.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032534.2 486 P18165 486 100% 0 0

Chromosomal Locations for CCDS 17546.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 92080517 92081977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGTCTCACCAGAAAAAGCAGCCCACTCCCTGCCCTCCTGTGGGTTGTGGAAAGACCTCTGGTGGAGGAG
GAGGCGGCGGCGGCGGCGGCGGCGGCGGCTATTATAGCGGTGGCGGCTCTGGCTGCGGAGGCGGCTCATC
TGGAGGAGGCTCTAGCTGTGGAGGCGGAGGCGGTGGTTCCTATGGAGGTGGTTCCAGCTGCGGCGGTGGA
GGCGGCTCCGGTGGGGGCGTCAAGTACTCCGGAGGCGGCGGTGGCTCTAGCTGCGGCGGCGGCTACTCCG
GAGGCGGTGGTGGCTCTAGCTGCGGCGGTGGCTACTCTGGGGGCGGCGGCGGCTCCAGCTGCGGAGGTGG
CTACTCCGGAGGCGGCGGCGGCTCCAGCTGCGGCGGCGGCAGCTACTCCGGGGGTGGCTCCAGCTGTGGA
GGCGGTGGCGGCTCTGGTGGGGGCGTCAAGTACTCCGGAGGTGGTGGCGGCGGCGGCTCTAGCTGCGGCG
GCGGCTCCTCCGGGGGTGGCGGCGGCGGCTCCAGCTGCGGAGGCGGATCAGGAGGCGGCGGCTCCTACTG
CGGAGGCTCCTCTGGAGGCGGCAGCTCCGGTGGCTGCGGCGGCGGTTCCGGAGGCGGCAAGTACTCTGGT
GGCGGCGGTGGCTCCAGCTGCGGAGGCGGCTATTCCGGCGGCGGTGGAAGCAGCGGCGGCTCTAGCTGTG
GCGGCGGCTACTCAGGTGGCGGTGGATCCAGCTGCGGCGGCGGCGGCGGCTATTCCGGTGGCGGCGGCAG
CAGCTGCGGAGGTGGTTCCTCCGGTGGCGGCGGCGGCGGATCGTCCCAACAGTATCAGTGCCAGAGCTAC
GGAGGCGGTTCTAGCGGTGGCTCCAGCTGCGGCGGCCGTTACTCCGGGGGCGGAGGCTCCAGCTGCGGTG
GCGGCTACTCCGGGGGCGGAGGCTCTAGCTGCGGAGGCGGCTCCTCTGGTGGTGGCTCCAGTTGCGGCGG
CAGCGGCGGCGGCGGCTATTCCGGTGGTGGCGGTGGCAGCTGCGGCGGCGGCTCCTCTGGCGGCGGAGGG
GGCTATTACTCCTCTCAGCAGACCAGTCAGACCTCCTGCGCCCCCCAGCAGAGCTACGGAGGGGGCTCTT
CCGGAGGAGGTGGTAGCTGTGGAGGTGGCTCCTCTGGCGGCGGTGGCGGCGGTGGCTGCTACTCCAGCGG
TGGTGGCGGCAGCAGCGGTGGCTGCGGTGGAGGCTACTCCGGAGGCGGCGGTGGCTGTGGCGGCGGCTCT
TCCGGGGGCAGCGGCGGTGGCTGCGGAGGTGGCTCTTCCGGAGGCAGCGGCGGTGGCTGCGGAGGAGGCT
ACTCCGGAGGCGGAGGCGGTGGCTCCAGCTGCGGAGGCGGCTCCTCTGGTGGCGGCTCTGGAGGTGGCAA
GGGTGTGCCAGTCTGCCACCAGACCCAGCAGAAGCAGGCGCCTACCTGGCCGTGCAAGTAA

Translation (486 aa):
MSHQKKQPTPCPPVGCGKTSGGGGGGGGGGGGGYYSGGGSGCGGGSSGGGSSCGGGGGGSYGGGSSCGGG
GGSGGGVKYSGGGGGSSCGGGYSGGGGGSSCGGGYSGGGGGSSCGGGYSGGGGGSSCGGGSYSGGGSSCG
GGGGSGGGVKYSGGGGGGGSSCGGGSSGGGGGGSSCGGGSGGGGSYCGGSSGGGSSGGCGGGSGGGKYSG
GGGGSSCGGGYSGGGGSSGGSSCGGGYSGGGGSSCGGGGGYSGGGGSSCGGGSSGGGGGGSSQQYQCQSY
GGGSSGGSSCGGRYSGGGGSSCGGGYSGGGGSSCGGGSSGGGSSCGGSGGGGYSGGGGGSCGGGSSGGGG
GYYSSQQTSQTSCAPQQSYGGGSSGGGGSCGGGSSGGGGGGGCYSSGGGGSSGGCGGGYSGGGGGCGGGS
SGGSGGGCGGGSSGGSGGGCGGGYSGGGGGGSSCGGGSSGGGSGGGKGVPVCHQTQQKQAPTWPCK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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