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Report for CCDS17621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17621.1 Public Mus musculus 3 Prpf3 23 108 98 CCDS HistoryNCBI Gene:70767Re-query CCDS DB by CCDS ID:17621.1Re-query CCDS DB by GeneID:70767See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17621.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015892.13 ENSMUSP00000015892.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015892.13Link to Ensembl Protein Viewer:ENSMUSP00000015892.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000015892Re-query CCDS DB by Protein ID:ENSMUSP00000015892
Original member Current member EBI ENSMUST00000161476.7 ENSMUSP00000124950.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161476.7Link to Ensembl Protein Viewer:ENSMUSP00000124950.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161476Re-query CCDS DB by Protein ID:ENSMUSP00000124950
Original member Current member NCBI NM_001316751.2 NP_001303680.1 Accepted alive Link to Nucleotide Sequence:NM_001316751.2Link to Protein Sequence:NP_001303680.1Re-query CCDS DB by Nucleotide ID:NM_001316751Re-query CCDS DB by Protein ID:NP_001303680Link to BLAST:NP_001303680.1
Original member Current member NCBI NM_027541.5 NP_081817.2 Accepted alive Link to Nucleotide Sequence:NM_027541.5Link to Protein Sequence:NP_081817.2Re-query CCDS DB by Nucleotide ID:NM_027541Re-query CCDS DB by Protein ID:NP_081817Link to BLAST:NP_081817.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303680.1 683 Q922U1 683 100% 0 0
NP_081817.2 683 Q922U1 683 100% 0 0

Chromosomal Locations for CCDS 17621.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95830819 95830965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95832561 95832622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95833753 95833836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95834084 95834202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95835354 95835467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95835644 95835743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95836414 95836557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95840670 95840749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95844186 95844352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95844925 95845231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95847375 95847595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95847765 95847848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95848915 95849061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95851563 95851693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95853444 95853588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2052 nt):
ATGGCGCTGTCTAAGCGGGAGCTGGATGAGCTGAAGCCATGGATAGAGAAGACGGTGAAGAGAGTGCTGG
GCTTCTCAGAGCCCACAGTGGTCACTGCAGCCTTGAACTGTGTGGGGAAGGGCATGGACAAAAAGAAGGC
GGCTGATCACCTGAAACCTTTTCTTGATGATTCCACTCTCCGATTTGTGGATAAGCTGTTTGAGGCTGTG
GAGGAAGGCCGAAGCTCAAGGCATTCCAAGTCTAGCAGTGACAGAAGCAGAAAGCGAGAGTTAAAGGAGG
TGTTTGGTGATGACTCTGAGATCTCAAAGGAATCATCGGGGGTAAAGAAGCGGCGGATACCCCGTTTTGA
GGAGGTAGAAGAGGAGCCAGAGGTGATCCCTGGACCTCCATCAGAAAGCCCTGGCATGCTAACAAAGCTC
CAGATCAAACAGATGATGGAAGCAGCAACACGACAAATCGAGGAACGGAAAAAACAGCTGAGCTTCATCA
GCCCCCCTGCACCTCAGCCAAAGACACCTTCTTCTTCCCAACCAGAGCGACTTCCCATCGGCAACACTAT
TCAGCCCTCCCAGGCCGCTACCTTTATGAACGATGCCATTGAGAAGGCGAGGAAAGCTGCCGAGCTGCAA
GCCCGAATCCAGGCCCAGCTGGCGTTGAAGCCAGGGCTTATTGGCAATGCCAACATGGTGGGCCTAGCTA
ATCTCCATGCCATGGGCATAGCTCCACCGAAAGTAGAGTTAAAAGACCAAACTAAGCCTACCCCATTGAT
CCTGGACGAGCAAGGCCGCACTGTGGATGCGACAGGCAAGGAGGTGGAGCTCACACATCGCATGCCCACC
CTGAAGGCAAACATTCGGGCTGTGAAGAGGGAACAGTTCAAGCAGCAGCTAAAAGAAAAGCCATCAGAAG
ACATGGAGTCTAATACCTTTTTTGACCCCCGAGTCTCAATTGCCCCTTCCCAGCGCCAAAGACGCACTTT
TAAATTCCATGACAAGGGCAAATTTGAGAAAATTGCTCAACGATTACGGACAAAGGCTCAATTGGAGAAG
CTGCAAGCAGAGATTTCACAAGCTGCTAGAAAAACAGGCATTCATACTTCGACTAGACTTGCCCTCATTG
CTCCCAAAAAGGAGCTAAAGGAAGGCGATATCCCTGAGATTGAGTGGTGGGACTCGTACATCATACCCAA
CGGCTTTGACCTTACAGAGGAAAATCCCAAGAGAGAAGATTATTTTGGAATCACAAATCTTGTTGAACAT
CCAGCCCAGCTTAATCCTCCAGTTGACAATGATACACCAGTTACCCTTGGGGTATATCTTACGAAGAAGG
AGCAGAAGAAACTACGGAGGCAAACAAGAAGGGAAGCACAGAAAGAGCTACAAGAGAAAGTCAGGCTAGG
CCTGACACCTCCTCCAGAGCCCAAAGTGAGAATCTCAAATTTAATGCGAGTATTAGGAACAGAAGCAGTT
CAAGACCCTACAAAGGTAGAAGCCCATGTCAGAGCTCAGATGGCAAAGAGACAGAAAGCGCATGAAGAGG
CCAACGCGGCCCGAAAACTTACAGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAGCTTAAAGAAGACAT
TTCACAGGGGGTGCACATATCTGTGTATAGAGTTCGAAATTTGAGCAACCCAGCCAAGAAGTTCAAGATT
GAGGCCAATGCTGGGCAGCTGTACCTGACAGGGGTGGTGGTGCTGCACAAAGATGTCAACGTGGTGGTAG
TGGAAGGGGGCCCCAAAGCCCAGAAGAAATTTAAGCGTCTCATGCTACATCGGATAAAGTGGGATGAGCA
GACATCTAACACGAAGGGAGATGATGATGAGGAATCTGATGAAGAAGCTGTGAAGAAAACTAACAAATGT
GTACTAGTATGGGAGGGTACAGCCAAAGACCGGAGCTTTGGAGAGATGAAGTTTAAACAGTGCCCTACAG
AGAACATGGCTCGTGAGCATTTCAAAAAGCATGGGGCTGAACACTACTGGGACCTTGCACTGAGTGAATC
TGTGTTGGAGTCCACCGACTGA

Translation (683 aa):
MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDKLFEAV
EEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVIPGPPSESPGMLTKL
QIKQMMEAATRQIEERKKQLSFISPPAPQPKTPSSSQPERLPIGNTIQPSQAATFMNDAIEKARKAAELQ
ARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEVELTHRMPT
LKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEK
LQAEISQAARKTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEH
PAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLTPPPEPKVRISNLMRVLGTEAV
QDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQGVHISVYRVRNLSNPAKKFKI
EANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKC
VLVWEGTAKDRSFGEMKFKQCPTENMAREHFKKHGAEHYWDLALSESVLESTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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