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Report for CCDS17654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17654.1 Public Mus musculus 3 Bcl9 23 108 98 CCDS HistoryNCBI Gene:77578Re-query CCDS DB by CCDS ID:17654.1Re-query CCDS DB by GeneID:77578See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17654.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046521.13 ENSMUSP00000046152.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046521.13Link to Ensembl Protein Viewer:ENSMUSP00000046152.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046521Re-query CCDS DB by Protein ID:ENSMUSP00000046152
Original member Current member EBI ENSMUST00000166341.1 ENSMUSP00000131692.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166341.1Link to Ensembl Protein Viewer:ENSMUSP00000131692.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166341Re-query CCDS DB by Protein ID:ENSMUSP00000131692
Original member NCBI NM_029933.4 NP_084209.3 Updated not alive Link to Nucleotide Sequence:NM_029933.4Link to Protein Sequence:NP_084209.3Re-query CCDS DB by Nucleotide ID:NM_029933Re-query CCDS DB by Protein ID:NP_084209
Current member NCBI NM_029933.5 NP_084209.3 Accepted alive Link to Nucleotide Sequence:NM_029933.5Link to Protein Sequence:NP_084209.3Re-query CCDS DB by Nucleotide ID:NM_029933Re-query CCDS DB by Protein ID:NP_084209Link to BLAST:NP_084209.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084209.3 1425 Q9D219 1425 100% 0 0

Chromosomal Locations for CCDS 17654.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 97204860 97205977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97207147 97207407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97208478 97210716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97212872 97212971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97213685 97213874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97215112 97215428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97216313 97216365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4278 nt):
ATGCATCCCAGTAACCCTAAAGTGAGGAGCTCGCCATCAGGAAACACACAGAGTAGCCCTAAGTCAAAGC
AGGAGGTGATGGTCCGTCCCCCTACAGTGATGTCCCCATCTGGAAACCCCCAGCTGGATTCCAAATTCTC
CAATCAGGGTAAACCGGGGGGCTCAGCCAGCCAATCCCAGCCATCCCCCTGTGACTCCAAGAGTGGGGGC
CATACCCCTAAAGCACTCCCTGGCCCAGGTGGGAGCATGGGGCTGAAGAATGGGGCTGGAAATGGTGCCA
AGGGCAAGGGGAAAAGGGAGCGAAGTATTTCGGCCGACTCCTTTGATCAGAGAGATCCTGGGACTCCAAA
CGATGACTCTGACATTAAAGAATGTAATTCTGCAGACCACATCAAGTCCCAGGAGTCCCAGCACACGCCA
CACTCCATGACCCCGTCAACTGCTACAGCCCCCAGGTCTTCCACTCCCTCCCATGGCCAAACTCCTGCCC
CAGAGCCCATATCTGCTCAGAAGACGCCAGCCAAAGTGGTGTATGTGTTTTCTACGGAGATGGCAAATAA
GGCTGCAGAAGCTGTACTGAAGGGCCAGGTTGAAACAATTGTCTCTTTCCACATCCAGAACATCTCTAAC
AGCAAGTCAGAGAGAAGCACAGCCCCCCTGAACACACAGATACCCACCCTTCGGAATGATCCAAAACCTC
TCCCACAGCAGCCTCCAGCTCCCGCCAACCAGGACCAGAACTCTTCCCAGAATGCCAGACTGCAGCCAAC
TCCTCCCATTCAGGCACCAGCACCCAAGCCTACTGCAGCCCCGCGTCCCCTGGACCGGGAGAGTCCTGGG
GTAGAAAACAAACTGATTCCTCCTGTGGGCAGTCCTGGGAGCTCCACTCCACTGCCCCCAGATGGTACTG
GGCCAAACTCAACACCCAACAATCGAGCAGTGACCCCTGTCTCCCAGGGGAGCAATAGCTCTTCAGCAGA
TCCCAAAGCCCCCCCACCTCCACCAGTGTCCGGTGGTGAGCCCCCCACGCTGGGAGAGAACCCTGATGGC
CTCTCTCAGGAGCAGCTGGAGCACCGGGAACGCTCCTTACAAACTCTGAGGGACATCCAGCGTATGCTTT
TCCCTGATGAGAAGGAGTTCACAGCAGGACAAACGGGGGGTCCCCAGCAGAACACTGGGGTTTTAGATGG
ACCTCAAAAAAAACCAGATGGGCCAATACAGGCCATGATGTCTCAATCCCAAAGCCTCGGTAAGGGTCCT
GGGCCCCGGACAGATGTGGGGGCTCCGTTTGGCCCTCAAGGACATAGAGATGTGCCCTTTTCTCCAGATG
AAATGGTTCCACCTAATATGAGCTCCCAGTCTGGGCCCATAGGACCCGACCACCTGGACCATATGACTCC
CGAGCAGATAGCATGGCTGAAGCTGCAGCAGGAGTTTTATGAAGAGAAGAGGCGGAAACAGGAGCAGGTG
GTCGTCCAGCAGTGCTCTCTCCAGGATATGATGGTCCATCAGCATGGGCCCCGGGGAGTGGTCCGAGGGC
CTCCCCCTCCGTACCAGATGGCTCCTGGTGAAGGCTGGGCACCTGGGGCAGAGCCGTTTCCTGATGGTAT
CAACATTTCACACTCTTTGCCCCCAAGGGGCATGGCTCCCCACCCCAACATGCCAGGGAGCCAGATGCGC
CTTCCTGGGTTTGCAGGAATGATAAATTCAGAAATGGAGGGGCCAAACGTGCCCAACCCGGCATCCAGAC
CAGGTCTCTCTGGAGTCAGTTGGCCAGACGATGTGCCAAAAATCCCAGATGGTCGAAATTTCCCTCCTGG
CCAGGGTGTCTTCAGTGGTCCTGGCCGAGGGGAGCGGTTTCCAAACCCCCAGGGCTTGTCTGAAGAGATG
TTTCAACAGCAGCTGGCAGAGAAGCAGCTGGCTCTGCCCCCAGGGATGAGCATGGAGGGCATCCGGCCTG
GCATGGAAATGAACAGGATGATTCCAGGCTCCCAGCGCCACATGGAGCCAGGAAGTAACCCCATCTTCCC
TCGGATACCAGTTGAGGGTCCTCTGAGCCCTTCCCGGGGTGACTTTCCAAAAGGAATGCCTCCACAGATA
GGTCCTGGTCGGGAACTTGAGTTTGGCATGGTTCCTGGTGGGATGAAGGGGGAAGTTAATCTAAACGTCA
ACATGGGATCCAGCTCTCAGATGATACCTCAGAAGATGAGGGAGGCTGGGGCAGGCCCTGAGGAGATGAT
GAAATTACGCCCTGGGAGCTCAGAAATGCTGCCTGCCCAGCAGAAGATGGTGCCCCTGCCATTTGGTGAG
CACCCTCAGCAGGAGTATGGTGTGGGCCCCAGGCCATTCCTTCCCATGTCTCAGGGTCCGGGCAGCAACA
GTGGCTTGCGCAATCTCAGAGAACCAATTGGGCCCGACCAAAGGACTAACAGCCGGCTCAGTCATATGCC
ACCACTACCTCTCAACCCTTCCAGTAACCCCACTAGCCTCAGCACAGCTCCTCCAGTTCAGCGTGGCCTG
GGGCGGAAGCCTTTGGATATATCTGTGGCAGGCAGCCAGGTGCATTCCCCAGGCATTAACCCTCTGAAGT
CTCCGACAATGCACCAAGTCCAGTCTCCAATGCTGGGCTCACCCTCCGGGAACCTCAAGTCCCCTCAGAC
TCCATCACAGCTGGCAGGCATGCTGGCAGGCCCAGCTGCTGCTGCTTCCATTAAGTCCCCTCCTGTCTTG
GGGTCTGCTGCTGCTTCGCCTGTTCACCTCAAGTCTCCATCACTTCCTGCCCCGTCGCCTGGATGGACCT
CCTCTCCCAAACCGCCCCTTCAGAGTCCTGGGATCCCTCCAAACCACAAAGCGCCCCTCACCATGGCCTC
CCCAGCCATGCTGGGAAGTGTGGAGTCAGGTGGCCCCCCGCCTCCTACAGCCAGCCAGCCTGCCTCGGTG
AACATCCCCGGAAGTCTTCCCTCTAGCACACCTTATCCCATGCCTCCAGAGCCCACCCTTTCCCAGAATC
CACTCTCCATTATGATGTCTCGAATGTCCAAGTTTGCGATGCCCAGTTCCACTCCATTATACCACGATGC
CATCAAGACTGTGGCCAGCTCCGATGATGACTCCCCGCCAGCTCGCTCGCCCAACTTGCCATCAATGAAT
AGCATGCCAGGAATGGGCATTAATACACAGAATCCTCGAATTTCAGGTCCAAACCCTGTGGTTCCGATGC
CAACCCTCAGCCCGATGGGAATGACCCAGCCACTTTCTCACTCCAATCAGATGCCCTCTCCTAATGCCAT
GGGACCCAGCATACCTCCTCATGGGGTCCCAATGGGGCCTGGCTTGATGTCACACAATCCTATCATGGGA
CATGGGTCCCAGGAGCCTCCAATGGTACCTCAAGGACGGATGGGCTTCCCCCAGGGCTTCCCTCCAGTAC
AGTCTCCTCCTCAGCAGGTTCCATTCCCTCACAATGGCCCCACTGGGGGACAAGGTAACTTCCCAGGAGG
GATAGGTTTCCCAGGAGAAGGACCCCTTGGTCGTCCCAGCAACCTGCCCCAAAGTTCAGCAGATCCAGCA
CTTTGCAAGCCTGGAGGCCCAGGGGCTCCTGACTCCTTCACTGTCCTGGGGAACAGCATGCCCTCCGTGT
TTACAGACCCAGATCTGCAGGAGGTAATCCGACCTGGAGCCACCGGAATACCTGAGTTTGATCTCTCCCG
CATTATCCCATCGGAGAAGCCCAGCCAGACACTGCAGTATTTCCCTCGAGGGGAAGTCCCCGGCCGCAAA
CAGCCACAAGGTCCTGGGCCTGGGTTTTCACACATGCAGGGGATGATGAGCGATCAAGCCCCAAGAATGG
GGTTAGCATTACCTGGCATGGGAGGCCCCGGGCCAGTAGGAACTCCAGACATTCCTCTTGGTACATCTCC
ATCCATGCCAGGCCACAACCCAATGAGACCACCAGCCTTTCTCCAGCAAGGCATGATGGGACCTCACCAC
CGGATGATGTCACCAGCACAATCCACAGTGCCCGGCCCAGCCACCCTGATGACCAATCCAGCTGCTGCTG
TGGGCATGATTCCTGGCAAGGATCGGGGGCCTGCTGGGCTCTATACCCACCCAGGGCCTGTGGGTTCTCC
AGGCATGATGATGTCCATGCAAGGCATGATGGGACCCCAACAGAACATCATGATTCCCCCACAAATGAGG
CCCCGGGGCATGGCTGCTGATGTGGGCATGGGTGGGTTTAGCCAAGGACCTGGTAACCCAGGAAACATGA
TGTTTTAA

Translation (1425 aa):
MHPSNPKVRSSPSGNTQSSPKSKQEVMVRPPTVMSPSGNPQLDSKFSNQGKPGGSASQSQPSPCDSKSGG
HTPKALPGPGGSMGLKNGAGNGAKGKGKRERSISADSFDQRDPGTPNDDSDIKECNSADHIKSQESQHTP
HSMTPSTATAPRSSTPSHGQTPAPEPISAQKTPAKVVYVFSTEMANKAAEAVLKGQVETIVSFHIQNISN
SKSERSTAPLNTQIPTLRNDPKPLPQQPPAPANQDQNSSQNARLQPTPPIQAPAPKPTAAPRPLDRESPG
VENKLIPPVGSPGSSTPLPPDGTGPNSTPNNRAVTPVSQGSNSSSADPKAPPPPPVSGGEPPTLGENPDG
LSQEQLEHRERSLQTLRDIQRMLFPDEKEFTAGQTGGPQQNTGVLDGPQKKPDGPIQAMMSQSQSLGKGP
GPRTDVGAPFGPQGHRDVPFSPDEMVPPNMSSQSGPIGPDHLDHMTPEQIAWLKLQQEFYEEKRRKQEQV
VVQQCSLQDMMVHQHGPRGVVRGPPPPYQMAPGEGWAPGAEPFPDGINISHSLPPRGMAPHPNMPGSQMR
LPGFAGMINSEMEGPNVPNPASRPGLSGVSWPDDVPKIPDGRNFPPGQGVFSGPGRGERFPNPQGLSEEM
FQQQLAEKQLALPPGMSMEGIRPGMEMNRMIPGSQRHMEPGSNPIFPRIPVEGPLSPSRGDFPKGMPPQI
GPGRELEFGMVPGGMKGEVNLNVNMGSSSQMIPQKMREAGAGPEEMMKLRPGSSEMLPAQQKMVPLPFGE
HPQQEYGVGPRPFLPMSQGPGSNSGLRNLREPIGPDQRTNSRLSHMPPLPLNPSSNPTSLSTAPPVQRGL
GRKPLDISVAGSQVHSPGINPLKSPTMHQVQSPMLGSPSGNLKSPQTPSQLAGMLAGPAAAASIKSPPVL
GSAAASPVHLKSPSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGSVESGGPPPPTASQPASV
NIPGSLPSSTPYPMPPEPTLSQNPLSIMMSRMSKFAMPSSTPLYHDAIKTVASSDDDSPPARSPNLPSMN
SMPGMGINTQNPRISGPNPVVPMPTLSPMGMTQPLSHSNQMPSPNAMGPSIPPHGVPMGPGLMSHNPIMG
HGSQEPPMVPQGRMGFPQGFPPVQSPPQQVPFPHNGPTGGQGNFPGGIGFPGEGPLGRPSNLPQSSADPA
LCKPGGPGAPDSFTVLGNSMPSVFTDPDLQEVIRPGATGIPEFDLSRIIPSEKPSQTLQYFPRGEVPGRK
QPQGPGPGFSHMQGMMSDQAPRMGLALPGMGGPGPVGTPDIPLGTSPSMPGHNPMRPPAFLQQGMMGPHH
RMMSPAQSTVPGPATLMTNPAAAVGMIPGKDRGPAGLYTHPGPVGSPGMMMSMQGMMGPQQNIMIPPQMR
PRGMAADVGMGGFSQGPGNPGNMMF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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