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Report for CCDS17736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17736.1 Public Mus musculus 3 Slc16a4 23 108 98 CCDS HistoryNCBI Gene:229699Re-query CCDS DB by CCDS ID:17736.1Re-query CCDS DB by GeneID:229699See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17736.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029502.13 ENSMUSP00000029502.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029502.13Link to Ensembl Protein Viewer:ENSMUSP00000029502.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029502Re-query CCDS DB by Protein ID:ENSMUSP00000029502
Original member NCBI NM_146136.2 NP_666248.1 Updated not alive Link to Nucleotide Sequence:NM_146136.2Link to Protein Sequence:NP_666248.1Re-query CCDS DB by Nucleotide ID:NM_146136Re-query CCDS DB by Protein ID:NP_666248
Current member NCBI NM_146136.3 NP_666248.1 Accepted alive Link to Nucleotide Sequence:NM_146136.3Link to Protein Sequence:NP_666248.1Re-query CCDS DB by Nucleotide ID:NM_146136Re-query CCDS DB by Protein ID:NP_666248Link to BLAST:NP_666248.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666248.1 500 Q8R0M8-1 500 100% 0 0

Chromosomal Locations for CCDS 17736.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 107292439 107292525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107297945 107298077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107298836 107298979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107299120 107299281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107300702 107301220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107303061 107303272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107304411 107304504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107311436 107311587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGGTGAAGAAGGAAAAAACGCCCTCCCCTTACACCAAACCCCTTGATGGAGGATGGGGGTGGATGGTCG
TGCTTCATTTTTTCCTGGTAAATGTGTTTGTGATGGGAATGACCAAGACATTTGCAATTTTCTTTGTGGT
TTTTCAAGAAGAGTTTGAAGGCACTTCAGAGCAAATTGGTTGGATTGGATCCATTATGTCATCACTCCGT
TTCTCTGCAGGTCCCCTGGCTGCTATCATCTGTGACGTACTTGGAGAGAAAGCTACCTCCATTCTTGGGA
CGTTCCTTGTCTCTGGTGGCTATGTCATCAGCAGCTGGGCCACAGGCATTCCCTTTCTTTGTGTGACCAT
GGGGCTGCTACCTGGTTTGGGATCTGCTTTCTTGTACCAAGTAGCTGCTGTGGTAATTACCAAATATTTC
AAAAAACGATTGGGCCTTTCTACAGCAATTGCCCGTTCTGGAATGGGGCTGACATTTTTGTTGGCACCCT
TTACAAAATTCCTCATAGATCTTTATGACTGGACAGGCGCTCTTATTTTATTTGGAGCAATTATATTGAA
CTTGGTGCCTTCCAGCATGCTCTTAAGACCCATCCACAGCCAATCAAACAACAATTCTGACATTGAAAAC
AAAGGTAGCATTTTGTCTGCAACTGAACCAGAGGCATCATACAAGACAGAGACATCGAAGTGCAAGGAGA
CACAGGAGCCTTTCATCAAAGACAGTACTATGAAGAAATCTGAACAACCTACCACAACCTTAACTGTCTT
AGGAAATCAAAGCGAAGAGTTCAGCAATAGGCCTCACAGGAACAGGCCGTTACTTATGAGCAATGGCAAA
AGTCACAAGAAAAAGTTTGTTTCATGGAACTGCAAACAAAAACTTTTAGATATCTCGCTCTTTAGAAACC
CTTTCTTCTACATTTTTACCTGGTCTTTTCTCCTGAGCCAATTAGCATATTTCATTCCCACTTTCCACCT
AGTAGCCAGAGCAAAAACACTTGGGATTGACGTAATGGATGCCTCCTACCTTGTGTCTGTAGCTGGTATC
ACTGAGACAGTCAGTCAGCTCATTTCTGGATGGATTGCTGATCAAAATTGGATCAAGAAGTATCAATACC
ACAAGTCTTACCTCATTCTGTGTGGTGTGACTAACCTGCTTGCTCCTTTAGCCACCACATTCCCACTCCT
TATGGCCTATACCATCCTTTTTGCCATTTTTGCTGGTGGCTACCTGGCACTAATACTGCCAGTATTGGTT
GACCTATCTAAGAATTCTAGAGTACACAAGTTTTTGGGATATGCCAGTTTCTTTGCCGGGATAGCTGTAC
TTTCTGGACCACCAATAGCAGGCTGGATATATGATTACACACAGACTTACACAGGCTCTTTCTATTTCTC
TGGCACCTGCTATATCCTCTCTTCAGTTTCCCTTTTTTTTGTACCACTGGCTGAAAGATGGAAACGCAAA
CAGTCTGACCTTCTGAGGACTACAATCAAGTAA

Translation (500 aa):
MVKKEKTPSPYTKPLDGGWGWMVVLHFFLVNVFVMGMTKTFAIFFVVFQEEFEGTSEQIGWIGSIMSSLR
FSAGPLAAIICDVLGEKATSILGTFLVSGGYVISSWATGIPFLCVTMGLLPGLGSAFLYQVAAVVITKYF
KKRLGLSTAIARSGMGLTFLLAPFTKFLIDLYDWTGALILFGAIILNLVPSSMLLRPIHSQSNNNSDIEN
KGSILSATEPEASYKTETSKCKETQEPFIKDSTMKKSEQPTTTLTVLGNQSEEFSNRPHRNRPLLMSNGK
SHKKKFVSWNCKQKLLDISLFRNPFFYIFTWSFLLSQLAYFIPTFHLVARAKTLGIDVMDASYLVSVAGI
TETVSQLISGWIADQNWIKKYQYHKSYLILCGVTNLLAPLATTFPLLMAYTILFAIFAGGYLALILPVLV
DLSKNSRVHKFLGYASFFAGIAVLSGPPIAGWIYDYTQTYTGSFYFSGTCYILSSVSLFFVPLAERWKRK
QSDLLRTTIK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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