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Report for CCDS17766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17766.1 Public Mus musculus 3 Clcc1 23 108 98 CCDS HistoryNCBI Gene:229725Re-query CCDS DB by CCDS ID:17766.1Re-query CCDS DB by GeneID:229725See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17766.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029483.14 ENSMUSP00000029483.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029483.14Link to Ensembl Protein Viewer:ENSMUSP00000029483.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029483Re-query CCDS DB by Protein ID:ENSMUSP00000029483
Original member Current member EBI ENSMUST00000106609.7 ENSMUSP00000102220.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106609.7Link to Ensembl Protein Viewer:ENSMUSP00000102220.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106609Re-query CCDS DB by Protein ID:ENSMUSP00000102220
Original member Current member NCBI NM_001177771.2 NP_001171242.1 Accepted alive Link to Nucleotide Sequence:NM_001177771.2Link to Protein Sequence:NP_001171242.1Re-query CCDS DB by Nucleotide ID:NM_001177771Re-query CCDS DB by Protein ID:NP_001171242Link to BLAST:NP_001171242.1
Original member Current member NCBI NM_001355632.1 NP_001342561.1 Accepted alive Link to Nucleotide Sequence:NM_001355632.1Link to Protein Sequence:NP_001342561.1Re-query CCDS DB by Nucleotide ID:NM_001355632Re-query CCDS DB by Protein ID:NP_001342561Link to BLAST:NP_001342561.1
Original member Current member NCBI NM_145543.2 NP_663518.1 Accepted alive Link to Nucleotide Sequence:NM_145543.2Link to Protein Sequence:NP_663518.1Re-query CCDS DB by Nucleotide ID:NM_145543Re-query CCDS DB by Protein ID:NP_663518Link to BLAST:NP_663518.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171242.1 539 Q99LI2 539 100% 0 0
NP_001342561.1 539 Q99LI2 539 100% 0 0
NP_663518.1 539 Q99LI2 539 100% 0 0

Chromosomal Locations for CCDS 17766.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108661367 108661495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108661932 108662033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108663524 108663631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108667963 108668184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108668699 108668839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108670902 108670995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108672820 108672917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108673281 108673427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108674637 108674963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108676685 108676936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGCTGTGTCGGCTGCTCCTTTGTGAATGTCTGTTGCTGATAACGGGTTATGCTCATGATGACGACTGGA
TTGACCCAACAGATATGCTTAACTATGACGCTGCTTCAGGAACGATGAGGAAATCTCAGGTGAGGTCTGG
AACATCAGAGAAGAAGGAAGTGAGCCCTGACTCGTCAGAAGCCGAGGAACTGTCAGACTGTTTGCACAGA
CTGGATTCTTTAACTCACAAGGTTGATAGTTGTGAAAAGAAGAAAATGAAAGATTATGAAAGTCAAAGTA
ATCCTGTTTTCAGGAGATATCTAAATAAGATTTTAATTGAAGCTGGCAAGCTTGGACTCCCTGATGAGAA
CAAAGTAGAGATGCGTTACGATGCTGAGATTCTCCTGAGCAGACAGACACTGTTGGAGATTCAGAAGTTC
CTCAGCGGAGAGGAGTGGAAGCCCGGAGCCCTGGACGACGCACTAAGTGACATTTTAATCAATTTTAAGT
GCCATGATTCAGAAGCATGGAAGTGGCAGTTTGAAGATTATTTTGGAGTAGATCCATATAATGTGTTTAT
GGTTCTCTTGTGTCTGCTCTGCCTTGTGGTGCTGGTGGCTACAGAGCTGTGGACTTATGTTCGCTGGTAC
ACACAGATGAAACGGATTTTCATCATCAGCTTTCTCTTGAGTTTAGCATGGAATTGGATATATCTGTATA
AGATGGCTTTTGCTCAGCATCAGGCTAACATTGCTGGGATGGAGCCTTTCGACAATTTATGTGCTAAGAA
GATGGATTGGACTGGAAGTCTCTGGGAATGGTTTACAAGTTCATGGACCTATAAGGATGACCCATGCCAA
AAGTACTATGAGCTCCTAATAGTCAACCCTATTTGGTTGGTTCCACCAACAAAGGCTCTGGCGATTACAT
TCACTAACTTTGTAACGGAACCATTAAAGCACATTGGAAAAGGAGCAGGTGAATTCATTAAAGCGCTCAT
GAAGGAGATTCCAGTGTTACTTCAGATTCCGGTGCTGGCGATCCTGGCGCTGGCTGTCCTGAGCTTCTGC
TATGGTGCTGGAAGGTCAGTTCCTATGCTGAGACACTTCGGTGGTCCTGACAGAGAACCTCCCCGAGCAC
TTGAGCCAGATGACAGAAGACGACAGAAGGGACTTGACTATAGACTCCATGGTGGAGCAGGTGATGCAGA
TTTCTCTTACAGGGGCCCAGCTGGCTCCATCGAGCAAGGCCCTTATGACAAAATGCATGCGAGTAAGAGA
GATGCTTTGAGACAGAGATTTCACTCTGGCAACAAGAGCCCTGAAGTGCTCCGGGCATTTGACTTACCTG
ACACAGAGGCACAAGAACATCCAGAAGTGGTCCCCAGCCATAAATCACCCATTATGAACACAAACCTTGA
GACTGGTGAACTCCCAGGAGAAAGCACCCCGACAGAATACAGCCAGTCTGCCAAGGATGTCTCTGGCCAA
GTTCCCAGCGCTGGCAAAAGCTCACCCACAGTGGACAAGGCCCAGCTGAAGACAGACTCCGAGTGCAGCC
CACCAGGAGGCTGCCCACCCAGCAAGGAAGCTGCAGTGGCAGCACACGGGACTGAACCTGTCAGCAGCCC
ATGTGGCTAA

Translation (539 aa):
MLCRLLLCECLLLITGYAHDDDWIDPTDMLNYDAASGTMRKSQVRSGTSEKKEVSPDSSEAEELSDCLHR
LDSLTHKVDSCEKKKMKDYESQSNPVFRRYLNKILIEAGKLGLPDENKVEMRYDAEILLSRQTLLEIQKF
LSGEEWKPGALDDALSDILINFKCHDSEAWKWQFEDYFGVDPYNVFMVLLCLLCLVVLVATELWTYVRWY
TQMKRIFIISFLLSLAWNWIYLYKMAFAQHQANIAGMEPFDNLCAKKMDWTGSLWEWFTSSWTYKDDPCQ
KYYELLIVNPIWLVPPTKALAITFTNFVTEPLKHIGKGAGEFIKALMKEIPVLLQIPVLAILALAVLSFC
YGAGRSVPMLRHFGGPDREPPRALEPDDRRRQKGLDYRLHGGAGDADFSYRGPAGSIEQGPYDKMHASKR
DALRQRFHSGNKSPEVLRAFDLPDTEAQEHPEVVPSHKSPIMNTNLETGELPGESTPTEYSQSAKDVSGQ
VPSAGKSSPTVDKAQLKTDSECSPPGGCPPSKEAAVAAHGTEPVSSPCG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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