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Report for CCDS17810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17810.1 Public Mus musculus 3 Bcar3 23 108 98 CCDS HistoryNCBI Gene:29815Re-query CCDS DB by CCDS ID:17810.1Re-query CCDS DB by GeneID:29815See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17810.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029766.8 ENSMUSP00000029766.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029766.8Link to Ensembl Protein Viewer:ENSMUSP00000029766.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029766Re-query CCDS DB by Protein ID:ENSMUSP00000029766
Original member Current member NCBI NM_013867.3 NP_038895.1 Accepted alive Link to Nucleotide Sequence:NM_013867.3Link to Protein Sequence:NP_038895.1Re-query CCDS DB by Nucleotide ID:NM_013867Re-query CCDS DB by Protein ID:NP_038895Link to BLAST:NP_038895.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038895.1 820 Q9QZK2-1 820 100% 0 0

Chromosomal Locations for CCDS 17810.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 122426456 122426754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122455053 122455092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122504927 122505055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122508126 122508571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122511219 122511322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122512351 122513003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122519263 122519378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122523169 122523340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122524924 122525035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122525287 122525499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122529582 122529760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2463 nt):
ATGGCTGCGGGAAAGTTTGCAAGCCTTCCCAGAAACATGCCTGTGAATCACCAGTTCCCCTTGGCCTCGT
CCATGGACCTCCTGAGCAGCAAGTCCCCTCTTGCTGAGCGTCGCACAGATGCCTATCAAGACGTGTCTAT
ACATGGCACTCTTCCACGGAAGAAAAAGGGCCCTCCTTCCATACGGTCCTGTGACAATGCTGGCCACTCC
AAATCCCCACGACAGAGCTCACCTCTGACCCAGGACATCATCCAGGAAAACCCACTGCAAGACCGGAAAG
GGGAAAACTTCATCTTCAGGGATCCATATCTTCTGGACCCAACTCTGGAATACGTGAAGTTCTCCAAGGA
GAGGCACATCATGGACAGGACCCCTGAGAGGCTGAAAAAGGAATTGGAGGAGGAGCTGCTGCTGAGCAGC
GAAGACCTACGCAGCCACGCCTGGTACCACGGCCGGATCCCCCGACAGGTGTCTGAAAACCTTGTGCAGC
GGGATGGGGACTTCCTGGTTCGCGACTCCCTGTCGAGCCCCGGAAACTTTGTCCTGACCTGTCAGTGGAA
GAACCTCGCTCAGCACTTTAAGATCAACCGGACTGTCCTGCGGCTCAGCGAGGCCTACAGCCGTGTGCAG
TACCAATTCGAGATGGAGAGCTTTGACTCCATCCCGGGGCTGGTCCGCTGCTACGTGGGCAACCGGCGGC
CCATCTCCCAACAGAGTGGTGCCATCATCTTCCAGCCCATCAATAGGACAGTGCCCCTCTGGTGTCTGGA
GGAGCGTTATGGCACCTCCCCGGGCCGAGGCCGGGAGGGCAGCCTGGCTGAGGGAAGGCCAGACGTGGTG
AAGAGGCTGAGCCTCACCACAGGCAGCAGCATCCAGGCTCGGGAACACAGCCTGCCCCGAGGAAACCTCC
TCAGGAATAAAGAGAAGAGTGGCAGCCAGCCCGCCTGCCTGGATCACGTGCAGGACAGGAAGGCCTTAAC
CCTCAAAGCTCACCAGTCGGAGAGTCACCTGCCAATAGGCTGCAAGCTGCCCCCCCAGTCTCCGAGTATG
GACACAAGCCCTTGCCCCAGCTCTCCCGTGTTCAGGACTGGCAGCGAGCCCACTCTGAGTCCAGCACTGG
TACGAAGGTTCTCTTCAGATGCTAGGACAGGGGAGGCGCTTCGGGGATCAGACAGCCAGCTGTGCCCCAA
GCCACCCCCGAAGCCCTGCAAGGTGCCCTTCCTCAAGACTCCCCCCTCTCCATCTCCCTGGCTCACCTCA
GAGGCCAACTACTGTGAACTGAACCCTGCTTTTGCTGTGGGCTGTGACAGGGGAGCCAAGCTTCCCATGC
AAGCCCACGACAGCCACGAGATGCTGCTGACAGCCAAACAGAATGGGCCATCGGGTCCCCGGAACTCTGG
CATCAACTACATGATCCTTGATGGGGATGACCAGGCGAGACATTGGGATCCACTGGCAGTGCAGACGGAT
GAAGGTCAGGAGGACAAGACCAAGTTTGTGCCACCTCTCATGGAGACCGTGTCGTCATTCAGACCCAATG
ACTTTGAGTCCAAGCTTCTTCCTCCAGAGAACAAACCCCTGGAAACGGCCATGCTGAAGCACGCGAAAGA
ACTGTTCACCAACCACGATGCCAGGGTCATTGCGCAGCACATGCTGAGCGTGGACTGCAAGGTTGCTAGG
ATACTCGAAGTCTCTGAAGACAGGAAGAGGAGCATGGGTGTGAGCTCTGGGTTGGAGCTCATTACTTTAC
CTCATGGACGGCAGCTGCGCCTGGACATCATCGAGAGGCACAACACCATGGCCATTGGCATTGCTGTGGA
CATTCTGGGCTGCACAGGCACACTGGAGAACCGAGCGGGTACCCTCAATAAGATCATCCAGGTGGCGGTG
GAACTGAAGGATGCCATGGGAGACCTCTATGCTTTCTCTGCCATCATGAAAGCCCTGGAGATGCCTCAGA
TCACAAGGTTAGAGAAAACATGGACGGCTCTGAGGCACCACTACACGCAGACAGCCATCCTCTATGAGAA
GCAGTTGAAGCCCTTTAGCAAAATCCTGCATGAAGGCAGAGAGTCTACATATGTCCCAGCAAGCAATGTG
TCAGTCCCTCTGCTGATGCCACTGGTGACCTTAATGGAACGCCAGGCTGTCACTTTTGAAGGGACCGACA
TGTGGGAAAACAATGACGAGAGCTGTGAAATTCTGCTGAATCACTTGGCAACAGCCAGGTTCATGGCTGA
GGCTTCTGAGAGCTACAGGATGAATGCTGAGAGGATCCTGGCAGATTTCCAACCAGATGAAGAAATGACT
GAGATCTTAAGGACTGAGTTCCAGATGAGATTGTTATGGGGCAGCAAGGGCGCCGAAGTCAACCAGAACG
AGAGATACGACAAGTTCAACCAGATCCTAACAGCCCTCTCACGGAAACTAGAACCTCCCTCTGGAAAGCA
GGCCGAGCTGTGA

Translation (820 aa):
MAAGKFASLPRNMPVNHQFPLASSMDLLSSKSPLAERRTDAYQDVSIHGTLPRKKKGPPSIRSCDNAGHS
KSPRQSSPLTQDIIQENPLQDRKGENFIFRDPYLLDPTLEYVKFSKERHIMDRTPERLKKELEEELLLSS
EDLRSHAWYHGRIPRQVSENLVQRDGDFLVRDSLSSPGNFVLTCQWKNLAQHFKINRTVLRLSEAYSRVQ
YQFEMESFDSIPGLVRCYVGNRRPISQQSGAIIFQPINRTVPLWCLEERYGTSPGRGREGSLAEGRPDVV
KRLSLTTGSSIQAREHSLPRGNLLRNKEKSGSQPACLDHVQDRKALTLKAHQSESHLPIGCKLPPQSPSM
DTSPCPSSPVFRTGSEPTLSPALVRRFSSDARTGEALRGSDSQLCPKPPPKPCKVPFLKTPPSPSPWLTS
EANYCELNPAFAVGCDRGAKLPMQAHDSHEMLLTAKQNGPSGPRNSGINYMILDGDDQARHWDPLAVQTD
EGQEDKTKFVPPLMETVSSFRPNDFESKLLPPENKPLETAMLKHAKELFTNHDARVIAQHMLSVDCKVAR
ILEVSEDRKRSMGVSSGLELITLPHGRQLRLDIIERHNTMAIGIAVDILGCTGTLENRAGTLNKIIQVAV
ELKDAMGDLYAFSAIMKALEMPQITRLEKTWTALRHHYTQTAILYEKQLKPFSKILHEGRESTYVPASNV
SVPLLMPLVTLMERQAVTFEGTDMWENNDESCEILLNHLATARFMAEASESYRMNAERILADFQPDEEMT
EILRTEFQMRLLWGSKGAEVNQNERYDKFNQILTALSRKLEPPSGKQAEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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