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Report for CCDS17854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17854.1 Public Mus musculus 3 Slc9b2 23 108 98 CCDS HistoryNCBI Gene:97086Re-query CCDS DB by CCDS ID:17854.1Re-query CCDS DB by GeneID:97086See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17854.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051849.9 ENSMUSP00000060640.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051849.9Link to Ensembl Protein Viewer:ENSMUSP00000060640.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000051849Re-query CCDS DB by Protein ID:ENSMUSP00000060640
Original member NCBI NM_178877.6 NP_849208.4 Updated not alive Link to Nucleotide Sequence:NM_178877.6Link to Protein Sequence:NP_849208.4Re-query CCDS DB by Nucleotide ID:NM_178877Re-query CCDS DB by Protein ID:NP_849208
Current member NCBI NM_178877.7 NP_849208.4 Accepted alive Link to Nucleotide Sequence:NM_178877.7Link to Protein Sequence:NP_849208.4Re-query CCDS DB by Nucleotide ID:NM_178877Re-query CCDS DB by Protein ID:NP_849208Link to BLAST:NP_849208.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849208.4 547 Q5BKR2-1 547 100% 0 0

Chromosomal Locations for CCDS 17854.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 135317104 135317193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135318280 135318460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135321886 135322056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135323629 135323771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135324509 135324636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135326094 135326269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135328992 135329098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135329768 135329917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135330583 135330691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135332416 135332552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135336354 135336574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135342270 135342300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1644 nt):
ATGGAGGATGAAGATAAGACAGCTGAATGTCAGCATTCAAAGCCACCTACGGGGATCACACACGAGGCTC
CTCCACATCACGAACTACAGGAAGAGAGAGTCATGAGCCTCAGAGGTACAGACAGAAGTGAACCGACAGA
AGGCAGTAACCTGCTGACCAGCGGTGAAAAAAAGCCACAGGACTCACCAACAGAACCCAATGGCCTGCAG
AGTCTGAGGCGATTCCTGGCCTGCCCTCCACGAGGCTGCCTGGCAAGAGTGATAACGAACGGTACCATGG
TTGTTCTTCTGTGGGCCATGGTTTGGTCAGTTACCGGCCCTGAATGTCTTCCTGGAGGAAATCTGTTTGG
AATTATCATTCTGTTCTATTGTTCCATCACCGGAGGTAAACTTTTTGGACTCATTAAGTTTCCAACATTG
CCTCCTCTGCCTCCTCTTCTTGGCATGCTGCTAGCTGGGTTTCTCTTGAGGAATATCCCAGTCATCAATG
ATAGCGTCCGGATCCAACACAAGTGGTCGTCATCTTTGAGAAGCATAGCCCTTTCTGTCATTCTGGTTCG
TGCTGGCCTTGGTCTAGATTCAAAGGCCCTGAGGAAGCTGAAGGGTGTGTGTGTGCGACTGGCCATGGGT
CCCTGCATCGTGGAGGCGTGTGCTTCTGCGATTCTCTCACACTTCCTGATGGGGTTGCCATGGCAATGGG
GGTTCATCCTGGGTTTTGTCGTAGGTGCCGTGTCCCCAGCTGTCGTGGTGCCCTCCATGCTCCTTTTGCA
GGAAGGAGGCTACGGTGTTGGAAAAGGTATCCCAACCTTACTCATGGCCGCCGGCAGCTTCGATGACATC
CTGGCCATCACTGGCTTCAACACGTGCTTAGGCGTGGCCTTTTCCACAGGATCTACAGTTTTTAACATCT
TCAGAGGCATCTTGGAGGTGGTAATTGGTGTGGCAGCTGGATCTTTTCTTGGGTTTTTTATCCAGTACTT
CCCGAGCAGGGACCAGGACAACCTCGTGTGGAAGCGAGCCTTTCTGGTTCTGGGTTTTGCTGTGCTCGCT
GTGTTCAGCAGTGTGTATTTTAGCTTCCCGGGGTCTGGAGGACTCTGCACGTTGGTCATGGCTTTCCTAG
CAGGCATGAGGTGGACTGACAAGAAGTCAGAGGTAGAAAAGGTCATTGCAGTTACCTGGGACGTTTTCCA
GCCTCTTCTTTTTGGCCTGATTGGAGCAGAGGTTTCCATTGTGTCTCTCAGAGCAGAAACGGTTGGCCTT
TGTGTTGCAACCCTCAGCATCGCAGTGCTTATACGAATTCTGACTACATTCCTGATGGTGTGTTTCGCTG
GCTTTAACATAAAGGAAAAGATATTTATTTCTTTTGCCTGGCTTCCAAAGGCCACGGTCCAGGCTGCCAT
TGGCTCTGTGGCTCTGGACACGGCAAGATCCCACGGAGAGAAGCAGCTGGAAGACTATGGGATGGATGTG
CTGACGGTGGCATTTTTGGCCATCCTCATTACAGCACCAATTGGAAGCCTACTGATTGGTTTGCTGGGTC
CCAGGGTTCTTCAGAAATCTGAACATCGAACCGAAGAGGAGGTTCAAGGAGAGACTTCTGCACACATTCA
GAGGAAGCCTGAGGATTCCATTACGGAAGCCTGA

Translation (547 aa):
MEDEDKTAECQHSKPPTGITHEAPPHHELQEERVMSLRGTDRSEPTEGSNLLTSGEKKPQDSPTEPNGLQ
SLRRFLACPPRGCLARVITNGTMVVLLWAMVWSVTGPECLPGGNLFGIIILFYCSITGGKLFGLIKFPTL
PPLPPLLGMLLAGFLLRNIPVINDSVRIQHKWSSSLRSIALSVILVRAGLGLDSKALRKLKGVCVRLAMG
PCIVEACASAILSHFLMGLPWQWGFILGFVVGAVSPAVVVPSMLLLQEGGYGVGKGIPTLLMAAGSFDDI
LAITGFNTCLGVAFSTGSTVFNIFRGILEVVIGVAAGSFLGFFIQYFPSRDQDNLVWKRAFLVLGFAVLA
VFSSVYFSFPGSGGLCTLVMAFLAGMRWTDKKSEVEKVIAVTWDVFQPLLFGLIGAEVSIVSLRAETVGL
CVATLSIAVLIRILTTFLMVCFAGFNIKEKIFISFAWLPKATVQAAIGSVALDTARSHGEKQLEDYGMDV
LTVAFLAILITAPIGSLLIGLLGPRVLQKSEHRTEEEVQGETSAHIQRKPEDSITEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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