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Report for CCDS17896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17896.1 Public Mus musculus 3 Ddah1 23 108 98 CCDS HistoryNCBI Gene:69219Re-query CCDS DB by CCDS ID:17896.1Re-query CCDS DB by GeneID:69219See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17896.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029845.14 ENSMUSP00000029845.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029845.14Link to Ensembl Protein Viewer:ENSMUSP00000029845.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029845Re-query CCDS DB by Protein ID:ENSMUSP00000029845
Original member Current member NCBI NM_026993.3 NP_081269.1 Accepted alive Link to Nucleotide Sequence:NM_026993.3Link to Protein Sequence:NP_081269.1Re-query CCDS DB by Nucleotide ID:NM_026993Re-query CCDS DB by Protein ID:NP_081269Link to BLAST:NP_081269.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081269.1 285 Q9CWS0 285 100% 0 0

Chromosomal Locations for CCDS 17896.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 145758862 145759164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145845705 145845804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145852251 145852324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145853157 145853276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145889084 145889227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145891442 145891558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGGCCGGCCTCGGCCACCCCTCCGCCTTCGGCCGGGCCACCCACGCCGTGGTGCGGGCTCCGCCCGAGT
CCCTGTGCCGCCACGCGCTGAGGCGCTCGCAGGGCGAGGAGGTGGATTTCGCTCGCGCCGAGCGCCAGCA
CGAGCTCTACGTGGGCGTGCTGGGCAGCAAGCTGGGGCTGCAGGTGGTGCAGCTGCCCGCCGACGAGAGC
CTGCCCGACTGCGTGTTCGTGGAGGACGTGGCCGTCGTGTGCGAGGAGACGGCCCTCATCACCCGCCCCG
GGGCGCCCAGCCGCAGGAAGGAGGTTGACATGATGAAAGAGGCTTTGGAAAAACTTCAGCTCAACATAGT
AGAGATGAAAGATGAAAATGCAACTTTGGATGGTGGGGACGTCCTATTCACAGGCAGAGAATTTTTTGTG
GGCCTTTCCAAAAGAACAAATCAACGAGGTGCTGAAATCTTGGCTGATACTTTTAAGGACTACGCAGTCT
CTACAGTCCCTGTGGCCGATTCTTTGCATTTAAAGAGTTTCTGCAGCATGGCCGGACCCAACCTGATTGC
AATAGGGTCCAGCGAATCTGCACAGAAGGCCCTCAAGATCATGCAACAGATGAGTGACCATCGTTATGAC
AAGCTCACTGTACCCGACGACATGGCCGCCAACTGCATATATCTAAATATCCCCAGCAAAGGGCATGTCT
TGCTGCACCGAACCCCAGAAGAGTACCCAGAAAGCGCAAAGGTCTATGAGAAACTCAAGGACCATCTACT
GATCCCTGTGAGCAACTCGGAGATGGAAAAGGTGGACGGCTTGCTCACCTGCTGCTCCGTTTTTATTAAC
AAGAAGATAGACTCCTGA

Translation (285 aa):
MAGLGHPSAFGRATHAVVRAPPESLCRHALRRSQGEEVDFARAERQHELYVGVLGSKLGLQVVQLPADES
LPDCVFVEDVAVVCEETALITRPGAPSRRKEVDMMKEALEKLQLNIVEMKDENATLDGGDVLFTGREFFV
GLSKRTNQRGAEILADTFKDYAVSTVPVADSLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDHRYD
KLTVPDDMAANCIYLNIPSKGHVLLHRTPEEYPESAKVYEKLKDHLLIPVSNSEMEKVDGLLTCCSVFIN
KKIDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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