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Report for CCDS17916.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17916.1 Public Mus musculus 3 Miga1 23 108 98 CCDS HistoryNCBI Gene:215708Re-query CCDS DB by CCDS ID:17916.1Re-query CCDS DB by GeneID:215708See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17916.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073089.12 ENSMUSP00000072836.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073089.12Link to Ensembl Protein Viewer:ENSMUSP00000072836.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000073089Re-query CCDS DB by Protein ID:ENSMUSP00000072836
Original member Current member NCBI NM_174868.4 NP_777357.2 Accepted alive Link to Nucleotide Sequence:NM_174868.4Link to Protein Sequence:NP_777357.2Re-query CCDS DB by Nucleotide ID:NM_174868Re-query CCDS DB by Protein ID:NP_777357Link to BLAST:NP_777357.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777357.2 600 Q4QQM5-1 600 100% 0 0

Chromosomal Locations for CCDS 17916.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 152276635 152276853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152278893 152279009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152283782 152283835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152285202 152285336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152287505 152287603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152289056 152289142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152290460 152290532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152290791 152290909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152297117 152297217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152317614 152317737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152320610 152320743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152322350 152322476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152333481 152333617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152335252 152335429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152337726 152337824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGTCAGACGAGACAGTCAGCAGATCACAGTTCTCCTTGAAGACGTACGCAGTTAGAGTGTTTGCTCTCC
CTGTGTCTTGGTATTATTCTCTCTCCCAGATCAAATTTTCACCAGTAGCTAAGAAGCTGTTCATGGTAAC
TGCCGTGAGTGCTGTGTCTGTGATTTTTCTGGCCCATCACTTTAAAAGAAGACGGGGAAAACAGAAGGGC
AAAGTGCTGCCCTGGGAACCCGAGCACCTCCTCCTTGAGCACACTAGGAGAGCTGCATCAGAAAAAGGTT
CGAGTTGCTCCAGCAGTCGGCAGAATCTGACCTTGTCGTTAAGCTCCACCAAGGAGAAAGGATCTCAGTG
TTGCAACTACCCGAATGGAGGGCTTCTCAGCAGATACTCGGGCTCTGCCCAGAGCCTGGGCTCCGTCCAG
AGTGTTAACTCCTGTCATAGTTGTGCTTGTGGAAATTCTAATTCCTGGGACAAAGCAGACGATGATGACA
TCAGACTTGTTAACATTCCTGTGACCACACCTGAGAACTTATACCTGATGGGTATGGAATTATTTGAAGA
GGCGTTACGACGATGGGAACAAGCTCTGACTTTTCGAAGTAGACAGGCTGAAGATGAAGCCTGCAGCTCT
GTTAAACTGGGAGCCGGAGATGCCATTGCAGAAGAAAGTGTGGATGATATTATTAGTTCAGAATTCATCC
ATAAACTTGAAGCTCTACTGCAAAGAGCGTATCGTCTCCAAGAGGAGTTTGAGGCTACCCTTGGGGGATC
TGACCCTAATTCCATTGCAAATGATACTGATAAAGACACAGACATGAGCTTGAGGGAGACTATGGATGAG
CTTGGCCTGCCAGACGCCATGAACATGGACTCAGCAGATCTCTTTGCTTCAGCAACAGAGCTCGCAGAGC
AGAGAGAAGCGCAGCAGACCTTCAGCCTGGAGTCTTTTTGTCCCTGCCCTTTCTACGAAGAAGCTATGCA
TTTAGTTGAAGAAGGAAAAATTTACTCCAGAGTGCTGAGAACGGAGATGCTGGAGTGCCTGGGAGACAGT
GACTTCCTCGCCAAACTTCACTGTATCCGGCAGGCTTTTCAGCTAATCCTTGCAGAAGCAGACAACAGGT
CATTCCTTGCTGAAAGTGGAAGGAAAATTTTGTCAGCTTTAATTGTGAAAGCACGGAAGAATCCAAAGAA
ATTTCAAGATGTTTTTGATGAAATGATCAATTTTTTAGAGCAGACTGATCACTGGGATAGCACTGAGCTG
GAACTTGCTGCCAGAGGGGTGAAAAATTTAAATTTTTATGACGTGGTTCTGGATTTTATATTAATGGATT
CCTTTGAAGATTTAGAAAACCCACCGACATCCATACAGAGCGTAGTGAACAATCGCTGGCTCAACTCTTC
CTTCAAAGAAAGCGCTGTGGCTTCAAGTTGTTGGTCAGTGCTGAAACAGAAAAGGCAACAGATGAAGATC
TCAGATGGATTTTTCGCTCATTTTTATGCCATTTGTGAGCATGTCAGCCCTGTTTTAGCCTGGGGCTTCT
TGGGTCCTAGAAATTCTCTCTATGACTTATGTTGCTTCTTTAAGAATCAAGTTCTTTTCTTTCTCAAAGA
CATCTTCGACTTTGAGAAGGTGCGCTATTCGAGCATAGACACGCTGGCGGAGGACCTCACGCACCTACTC
ATCCGCCGCACGGAGCTGCTGGTCACCTGTCTTGGTGCAGATGCCCTGAGGCACGCCACCACTTGCACGA
GTGGACACTCCCACGCCGTGCCCACTGCGCTCTTAGAAGCCAAAGTACAATAA

Translation (600 aa):
MSDETVSRSQFSLKTYAVRVFALPVSWYYSLSQIKFSPVAKKLFMVTAVSAVSVIFLAHHFKRRRGKQKG
KVLPWEPEHLLLEHTRRAASEKGSSCSSSRQNLTLSLSSTKEKGSQCCNYPNGGLLSRYSGSAQSLGSVQ
SVNSCHSCACGNSNSWDKADDDDIRLVNIPVTTPENLYLMGMELFEEALRRWEQALTFRSRQAEDEACSS
VKLGAGDAIAEESVDDIISSEFIHKLEALLQRAYRLQEEFEATLGGSDPNSIANDTDKDTDMSLRETMDE
LGLPDAMNMDSADLFASATELAEQREAQQTFSLESFCPCPFYEEAMHLVEEGKIYSRVLRTEMLECLGDS
DFLAKLHCIRQAFQLILAEADNRSFLAESGRKILSALIVKARKNPKKFQDVFDEMINFLEQTDHWDSTEL
ELAARGVKNLNFYDVVLDFILMDSFEDLENPPTSIQSVVNNRWLNSSFKESAVASSCWSVLKQKRQQMKI
SDGFFAHFYAICEHVSPVLAWGFLGPRNSLYDLCCFFKNQVLFFLKDIFDFEKVRYSSIDTLAEDLTHLL
IRRTELLVTCLGADALRHATTCTSGHSHAVPTALLEAKVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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