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Report for CCDS18058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18058.1 Public Mus musculus 4 Ubap2 23 108 98 CCDS HistoryNCBI Gene:68926Re-query CCDS DB by CCDS ID:18058.1Re-query CCDS DB by GeneID:68926See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030143.12 ENSMUSP00000030143.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030143.12Link to Ensembl Protein Viewer:ENSMUSP00000030143.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030143Re-query CCDS DB by Protein ID:ENSMUSP00000030143
Original member NCBI NM_026872.1 NP_081148.1 Updated not alive Link to Nucleotide Sequence:NM_026872.1Link to Protein Sequence:NP_081148.1Re-query CCDS DB by Nucleotide ID:NM_026872Re-query CCDS DB by Protein ID:NP_081148
Current member NCBI NM_026872.2 NP_081148.1 Accepted alive Link to Nucleotide Sequence:NM_026872.2Link to Protein Sequence:NP_081148.1Re-query CCDS DB by Nucleotide ID:NM_026872Re-query CCDS DB by Protein ID:NP_081148Link to BLAST:NP_081148.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081148.1 1132 Q91VX2 1132 100% 0 0

Chromosomal Locations for CCDS 18058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41195151 41195246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41195334 41195525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41195608 41195672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41195746 41195853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41195944 41196043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41196328 41196533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41196730 41196808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41199218 41199265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41199494 41199585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41199716 41199902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41201464 41201533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41202274 41202457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41203533 41203572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41205524 41205737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41206153 41206325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41206833 41207104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41209353 41209569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41211705 41211894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41216566 41216633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41218311 41218363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41221556 41221621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41223356 41223459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41226280 41226334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41227199 41227276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41229695 41229848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41233604 41233714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41235517 41235594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41251535 41251633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3399 nt):
ATGATGACTTCTGTGAGCAATGATCGTTGCCGAGGTGCTCGGGAAAAACCACAGATGCCAACAGCACACG
CAGCCCAGTCACAGAAACAAGTGGTGCAGGCAACAGCTGAGCAGATGCGGCTTGCTCAAGTGATCTTTGA
TAAGAATGATTCAGATTTTGAAGCTAAAGTTAAGCAGCTTATGGAAGTGACGGGAAAAAATCAGGATGAA
TGCATCGTGGCCCTACATGACTGTAATGGTGATGTGAACAAAGCTATCAATATACTGTTGGAAGGGAATT
CTGACACCACTTCATGGGAGACTGTAGGAGGGAAGAAGAAGAATTTTGGAAGAGAAAGTTCAGAAAACAA
AGAAAACAGAGAGAAGAGGACGGAGAGAGAAGCGAGTCGTGGACGGGGAACCAACAACCGCAAGGGAAGA
GGCGGCAACCGAGTCCGAGAGTTCAAAGGTGAAGAGAATGGGATTGACTGCAGCCAAGGAGACAAGCCTG
CGGAGCGGGGCAAGCGGGCCCGAGGCAGAGGATTTGGACGTGGCAGGGGCAGAGGGACAGGAAGGTTCTC
CGCTCAAAGCATGGGGACATTCAATCCTGCAGACTATTCAGAGTCCATGTCTACAGATGGCTGTGGGACA
AAGTTGGCAGTTTGGGAAGCTGCTCAGAATGGTACAGATGAGGGACCGGAAGGGCTGGCCAAGTCTCACA
GTATGTCTCAGGAACCGCCAAGTAAAAGTTCTTATGGACTTAAAGGTGCCTGGAAGAATTCTGTGGAAGA
GTGGACAACAGAAGACTGGACTGAAGATCTCTCTGAAACAAAGGTATTCACTGCTTCATCTGCTCCAGCA
GAGAACCATGTCACACCTGGGCACAGCATTGATCTGGTGGCCTTGCTCCACAAGCCTGCTCCTCCCACCC
AAGCCACCGAAGTCAACTCCTTTGAAACATCCCAGCAGCAGGGCTTTGGCCAAGCCCTTGTCTTCACAAA
TTCTCAGCACAACAATCAGATGGCACCAGGGACTGCAAACTCCACTTCTGCCAGCTCATATTCTCCTCAG
AGTTTGTCATCCGTCCTTGGCTCAGGATTTGGAGAGCTGCCTCAATCAAACATGGTGAACATCTCCAACT
CCCAGATTTTGGACAAGTTGAAACCGCCAGGTTTGAGCCCATTTCCCGCTGCTTCAAGCGCACAGCAGAA
TGACACTGCGAGCCCCCCAGCCACCACTGCTGCTTGGGACCTCAAGCCCTCGGCGCCCCAACCCTCAGTC
CTCAGTCGTTTGGACTTCAAATCTCAGCCTGAACCATCTCCAGTTCTCAGCCAGTTGAGCCAGCGACAGC
AACACCAGACCCAGGCCGTCAGTGTCCCTCCTCCTGGTTTGGAGTCCTTTTCTTCTCTGGCAAAACCCCG
AGAATCCACAGCTGGAGATGGTCCTTCTACTGTTAGCAGACTTTTGCAGCTTCCTAACATGACTGTTGAA
AATATTGTATCTGCCCACCAACCACAGCCCAAACATATTAAACTTCCTAAGCGCCGGGTACCTCCAGCGT
CTAAGGTTCCTGTGTCCGCAGTGGAAATGCCCGGGTCTTCAGATGTCACAGGGCTGAATGTTCAGTTTGG
GGCCCTGGAATTTGGATCAGAGCCATCGCTCTCTGAGTTTGGATCAGCAGCTTCAGCCAGTGAAAATAGT
AATCAGATTCCTATCAGCTTGTACCCGAAGTCTTTAAGTGAGCCCTTGAATGCCTCTTTCCCAATGACCA
GTGCTGTACAGAGCTCTACCTACACAACCTCAGTCGTTACCTCCTCCACTCTGACCAGCTCGGCCTTGAG
CTCCACTAGCCCAGTAACAACTTCTTCCTCTTACGACCAGAGTTCTGTGCATACCAGGATTGCATACCAA
AGCTCTGCAAGCCCACCCGACTCAGCTCCAGGCTCTGTTGCTAACGGACATGGCGGTGGTCGAAGTCAGC
ACACAGTAGACACTACTTCATCCGTTCCAGCTCCAAAGAAGACAGACCCTTCCGCACTCCCATCTGTGAG
CACCCTGCCCGGCCCCGCCTCCTGCACTGCACTTCTGCCCTCCTCAGCCCAGCACACTGCCACCTTGCCC
TCCCTGACCCCGGCTGCTGCTGAACTGTCCAGCAGCCCTCTCTCTCAGCTCAGCAGCTCCCTCTCTGGCC
ACCAGAACAGCATGACCTCTGCACATGCGACACGTTCCACAAGCACGCCACACACTCATGCCAGCGTGGA
GAGCACCGCATCCTCCGCCGCCTTCTCAGCAGCGGCGACCTCTGCTCCAAGTGCCCCGTCCTCAGGGGTT
GTCCTGCCTGGGAGCATGAGCACTGTGAGCAGCCTGTGCCTGGGGGGGACCACTGTGAGCGTCCCTAGCA
GCAGCACCAGGGCCACGGCCTTGGTGACCTCAGGCAAAGCACCCCCAAACCTGCCTCAAGGGGTGCCTCC
CCTGCTACACAATCAGTACCTCGTGGGCCCTGGAGGACTGCTTCCTGCTTACCCGATTTACGGTTATGAT
GAGCTCCAGATGCTGCAGTCACGGCTGCCAATGGATTACTATGGAATTCCCTTTGCAGCACCCACAGCCC
TTGCCAGCCGAGATGGGAATCTAGCTAATAATCCATATTCAGGTGACGTCACAAAGTTTGGCCGAGGAGA
CTCTGCATCCCCTGCACCTCCAACGACCCCAGCTCAGGCCCAGCAGAGCCAGTCTCAGACCCACCACACG
GCCCAGCAGCCCTTTTTGAATCCTGGTCTGCCACCTGGCTACAGCTATACCGGCCTCCCCTACTACACAG
GCGTGCCCAGTGCCTTCCAGTATGGGCCTACTATGTTTGTCCCTCCAACCTCAGCGAAGCAGCACGGTGT
GGCCCTCAGCACTCCCCCGACCCCTTTCCAGCAGGCCAGTGGCTATGGGCAGCACGCTTACAGCACAGGT
TATGACGATTTGACCCAGGGGACGGCAGCAGGAGACTACACCAAGGGTGGCTATGGTGGATCATCTCAGG
CACCAAACAAGTCGACTGGTTCTGGGCCTGGCAAAGGAGTGTCAGTATCTTCAGGCACTGGCTTACCTGA
TATGACTGGTTCCGTCTACAACAAGACACAGACTTTTGACAAGCAGGGATTTCATGCCGGGACTCCTCCA
CCATTCAGCCTGCCGTCTGCCTTGGGCTCCACCGGGCCCCTGGCCCCTGCAGCGGCCCCCGGCTACGCGC
CTGCCCCGTTCCTGCACATCATGCCGGCCCACCAGCAGCCCCACTCCCAGCTGTTGCACCACCACCTACA
GCAGGATGCCCCGAGCGGCTCTGGTCAGCGCAGCCAGCCCAGCTCCCTTCAGCCCAAGTCTCAAGCCTCC
AAACCCACCTACGGCAGCGCTCCATACTGGACAAACTAG

Translation (1132 aa):
MMTSVSNDRCRGAREKPQMPTAHAAQSQKQVVQATAEQMRLAQVIFDKNDSDFEAKVKQLMEVTGKNQDE
CIVALHDCNGDVNKAINILLEGNSDTTSWETVGGKKKNFGRESSENKENREKRTEREASRGRGTNNRKGR
GGNRVREFKGEENGIDCSQGDKPAERGKRARGRGFGRGRGRGTGRFSAQSMGTFNPADYSESMSTDGCGT
KLAVWEAAQNGTDEGPEGLAKSHSMSQEPPSKSSYGLKGAWKNSVEEWTTEDWTEDLSETKVFTASSAPA
ENHVTPGHSIDLVALLHKPAPPTQATEVNSFETSQQQGFGQALVFTNSQHNNQMAPGTANSTSASSYSPQ
SLSSVLGSGFGELPQSNMVNISNSQILDKLKPPGLSPFPAASSAQQNDTASPPATTAAWDLKPSAPQPSV
LSRLDFKSQPEPSPVLSQLSQRQQHQTQAVSVPPPGLESFSSLAKPRESTAGDGPSTVSRLLQLPNMTVE
NIVSAHQPQPKHIKLPKRRVPPASKVPVSAVEMPGSSDVTGLNVQFGALEFGSEPSLSEFGSAASASENS
NQIPISLYPKSLSEPLNASFPMTSAVQSSTYTTSVVTSSTLTSSALSSTSPVTTSSSYDQSSVHTRIAYQ
SSASPPDSAPGSVANGHGGGRSQHTVDTTSSVPAPKKTDPSALPSVSTLPGPASCTALLPSSAQHTATLP
SLTPAAAELSSSPLSQLSSSLSGHQNSMTSAHATRSTSTPHTHASVESTASSAAFSAAATSAPSAPSSGV
VLPGSMSTVSSLCLGGTTVSVPSSSTRATALVTSGKAPPNLPQGVPPLLHNQYLVGPGGLLPAYPIYGYD
ELQMLQSRLPMDYYGIPFAAPTALASRDGNLANNPYSGDVTKFGRGDSASPAPPTTPAQAQQSQSQTHHT
AQQPFLNPGLPPGYSYTGLPYYTGVPSAFQYGPTMFVPPTSAKQHGVALSTPPTPFQQASGYGQHAYSTG
YDDLTQGTAAGDYTKGGYGGSSQAPNKSTGSGPGKGVSVSSGTGLPDMTGSVYNKTQTFDKQGFHAGTPP
PFSLPSALGSTGPLAPAAAPGYAPAPFLHIMPAHQQPHSQLLHHHLQQDAPSGSGQRSQPSSLQPKSQAS
KPTYGSAPYWTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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