NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18059.1 Public Mus musculus 4 Dcaf12 23 108 98 CCDS HistoryNCBI Gene:68970Re-query CCDS DB by CCDS ID:18059.1Re-query CCDS DB by GeneID:68970See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18059.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030145.8 ENSMUSP00000030145.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030145.8Link to Ensembl Protein Viewer:ENSMUSP00000030145.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030145Re-query CCDS DB by Protein ID:ENSMUSP00000030145
Original member Current member NCBI NM_026893.3 NP_081169.2 Accepted alive Link to Nucleotide Sequence:NM_026893.3Link to Protein Sequence:NP_081169.2Re-query CCDS DB by Nucleotide ID:NM_026893Re-query CCDS DB by Protein ID:NP_081169Link to BLAST:NP_081169.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081169.2 453 Q8BGZ3 453 100% 0 0

Chromosomal Locations for CCDS 18059.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41293056 41293214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41293933 41294111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41296311 41296473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41298286 41298351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41299407 41299600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41301334 41301394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41302614 41302820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41313211 41313465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41314488 41314565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGCCCGGAAAGCAGTTAGCAGGAAGCGGAAAGCGTCTGCCTCGCCAGGAGCCGGGAGCGACGCTCAGG
GCCCGCAGTTTGGCTGGGATCATTCGCTGCACAAAAGGAAAAGACTCCCCCCAGTGAAGAGATCCCTAGT
GTACTACCTGAAGAACCGCGAAGTCAGGCTCCAGAATGAGACCAGCTACTCTCGCCTGTTACATGGTTAT
GCAGCACAACAGCTTCCCAGTCTCCTCAAGGAGAGAGAATTTCACCTCGGGACCCTTAATAAAGTGTTTG
CTTCTCAGTGGTTGAATCATAGGCAAGTGGTGTGTGGCACGAAATGCAACACACTCTTTGTCGTGGATGT
CCAGACAGGCCAGATCACCAAGATTCCCATTCTGAAAGACCGGGAACCTGGAGGTGTGACTCAGCAGGGC
TGTGGTATCCATGCAATTGAACTGAATCCTTCTAGAACACTCCTAGCCACTGGAGGAGACAACCCTAACA
GTCTTGCCATCTACCGCCTGCCTACCTTAGATCCTGTGTGTGTGGGTGATGATGGACACAAGGATTGGAT
CTTTTCTATTGCGTGGATCAACGATACTATGGCAGTGTCTGGCTCACGGGATGGGTCTATGGGACTCTGG
GAGGTGACAGATGATGTGTTGACCAAAAGTGATGCAAGACATAACGTGTCACCAGTCCCTGTGTATGCTC
ACATCACTCACAAGGCCTTAAAGGATATCCCCAAGGAGGATACAAACCCGGACAACTGCAAGGTGCGGGC
TTTAGCCTTCAACAACAAGAACAAGGAGTTGGGAGCGGTATCACTAGATGGCTACTTTCATCTCTGGAAG
GCTGAAAATACCTTGTCTAAGCTCCTTTCCACCAAATTGCCATATTGTCGAGAAAACGTGTGTCTGGCCT
ATGGTAGTGAGTGGTCAGTGTATGCAGTGGGCTCTCAAGCGCATGTCTCCTTCTTGGATCCACGGCAGCC
ATCGTACAACGTCAAGTCTGTCTGCTCCAGGGAACGAGGCAGTGGGATTCGATCAGTGAGCTTCTATGAA
CACATTATCACTGTGGGCACAGGGCAGGGCTCCCTGCTGTTCTATGACATCCGAGCTCAAAGATTTTTGG
AAGAGAGGCTCTCAGCTTGTTATGGGTCCAAGCCCAGACTCGCAGGGGAGAATCTGAAACTAACTACTGG
CAGGGGCTGGCTGAATCATGATGAAACCTGGAGGAATTACTTTTCGGACATTGACTTCTTCCCCAATGCT
GTTTACACCCACTGCTACGACTCGTCCGGAACGAAACTCTTTGTGGCAGGGGGCCCCCTCCCTTCTGGGC
TCCACGGAAACTATGCTGGACTGTGGAGTTAA

Translation (453 aa):
MARKAVSRKRKASASPGAGSDAQGPQFGWDHSLHKRKRLPPVKRSLVYYLKNREVRLQNETSYSRLLHGY
AAQQLPSLLKEREFHLGTLNKVFASQWLNHRQVVCGTKCNTLFVVDVQTGQITKIPILKDREPGGVTQQG
CGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWINDTMAVSGSRDGSMGLW
EVTDDVLTKSDARHNVSPVPVYAHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWK
AENTLSKLLSTKLPYCRENVCLAYGSEWSVYAVGSQAHVSFLDPRQPSYNVKSVCSRERGSGIRSVSFYE
HIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGRGWLNHDETWRNYFSDIDFFPNA
VYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH