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Report for CCDS18068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18068.1 Public Mus musculus 4 Rpp25l 23 108 98 CCDS HistoryNCBI Gene:69961Re-query CCDS DB by CCDS ID:18068.1Re-query CCDS DB by GeneID:69961See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18068.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038434.3 ENSMUSP00000041477.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038434.3Link to Ensembl Protein Viewer:ENSMUSP00000041477.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000038434Re-query CCDS DB by Protein ID:ENSMUSP00000041477
Original member Current member NCBI NM_027278.3 NP_081554.2 Accepted alive Link to Nucleotide Sequence:NM_027278.3Link to Protein Sequence:NP_081554.2Re-query CCDS DB by Nucleotide ID:NM_027278Re-query CCDS DB by Protein ID:NP_081554Link to BLAST:NP_081554.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081554.2 163 Q99JH1 163 100% 0 0

Chromosomal Locations for CCDS 18068.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41712282 41712773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGGAACAGTACCGGAGGGCCGGCTCTGTAGAGCTTCCAGCCTCATCACCAATGCCCCAGCTACCTCCTG
ACACTCTGGAAATGCGAGTCCGAGATGGGAGCAAAATCCGAAACCTGCTAGGGCTGGCGCTGGGTCGTTT
GGAAGGGGGAAGCACCAGGCACGTGGTGTTCTCAGGCTCTGGCCGGGCTGCTGGAAAGGCTGTCAGCTGT
GCAGAGATTGTCAAAAGGCGGGTTCCGGGCCTACACCAGCTCACCAAGCTCCGCTTCCTGCAAACGGAGG
ACAGCTGGGTCCCAACTTCACCAGACACGGGACTAGACCCCCTCACAGTCCGACGCCACGTGCCTGCGGT
GTGGGTACTGCTTAGTCGGGACCCCTTGGACCCCAGTGAATGTGGCTACCAACCCCCAGGTGCACCTCCT
GGCCTGGGTTCCATACCTAGTCCCAGCTGTGGCCCCAGACCCCGAAGGAGGGCTCGGGACACCCGGTCCT
GA

Translation (163 aa):
MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSC
AEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQPPGAPP
GLGSIPSPSCGPRPRRRARDTRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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