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Report for CCDS1811.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1811.1 Public Homo sapiens 2 ZFP36L2 24 110 108 CCDS HistoryNCBI Gene:678Re-query CCDS DB by CCDS ID:1811.1Re-query CCDS DB by GeneID:678See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1811.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282388.4 ENSP00000282388.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000282388.4Link to Ensembl Protein Viewer:ENSP00000282388.3Re-query CCDS DB by Nucleotide ID:ENST00000282388Re-query CCDS DB by Protein ID:ENSP00000282388
Original member Current member NCBI NM_006887.5 NP_008818.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006887.5Link to Protein Sequence:NP_008818.3Re-query CCDS DB by Nucleotide ID:NM_006887Re-query CCDS DB by Protein ID:NP_008818Link to BLAST:NP_008818.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008818.3 494 P47974 494 100% 0 0

Chromosomal Locations for CCDS 1811.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 43224319 43225752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 43226265 43226315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGTCGACCACACTTCTGTCCGCCTTCTACGATGTCGACTTCTTGTGCAAGACAGAGAAATCCCTGGCCA
ACCTCAACCTGAACAACATGCTGGACAAGAAGGCGGTGGGGACGCCTGTGGCCGCCGCCCCCAGCTCGGG
CTTCGCGCCGGGATTCCTCCGACGGCACTCGGCCAGCAACCTGCATGCACTCGCCCACCCCGCGCCCAGC
CCCGGCAGCTGCTCGCCCAAGTTCCCGGGCGCCGCTAACGGCAGCAGCTGCGGCAGCGCGGCGGCCGGCG
GTCCGACCTCCTACGGCACCCTTAAGGAGCCGTCGGGGGGCGGCGGCACAGCCCTGCTCAACAAGGAGAA
CAAATTCCGGGACCGCTCGTTTAGCGAGAACGGCGATCGCAGCCAGCACCTCCTGCACCTGCAGCAGCAG
CAGAAGGGGGGCGGCGGCTCCCAGATCAACTCCACGCGCTACAAGACCGAGCTGTGCCGGCCCTTCGAGG
AGAGCGGCACGTGCAAGTACGGCGAAAAGTGCCAGTTCGCGCATGGCTTCCACGAGCTGCGCAGCCTGAC
TCGCCATCCGAAGTACAAGACCGAGCTGTGCCGCACCTTTCATACCATCGGCTTCTGCCCCTATGGGCCG
CGCTGCCACTTCATCCACAACGCGGACGAGCGGCGGCCCGCGCCGTCGGGGGGCGCCTCCGGGGACCTGC
GTGCCTTTGGCACGCGCGATGCGTTGCACCTGGGCTTCCCGCGGGAGCCGCGGCCCAAGTTGCACCACAG
CCTCAGCTTCTCGGGCTTCCCGTCGGGCCACCATCAGCCCCCGGGCGGCCTCGAGTCGCCGCTGCTGCTC
GACAGCCCCACGTCGCGCACGCCGCCGCCGCCCTCCTGCTCTTCGGCCTCGTCCTGCTCCTCCTCCGCCT
CCTCCTGTTCCTCGGCCTCCGCGGCCTCCACGCCCTCGGGCGCCCCGACATGCTGCGCCTCCGCGGCGGC
CGCGGCTGCGGCCGCTCTGCTGTACGGCACCGGGGGCGCCGAGGACCTGCTGGCGCCGGGGGCCCCGTGC
GCGGCCTGCTCGTCGGCCTCGTGCGCCAACAACGCCTTCGCCTTCGGTCCGGAGCTCAGCAGCCTCATCA
CGCCGCTCGCCATCCAGACCCACAACTTTGCCGCCGTGGCCGCCGCCGCCTACTACCGCAGTCAGCAGCA
GCAGCAGCAGCAGGGCCTGGCGCCCCCCGCGCAGCCGCCGGCGCCGCCCAGCGCGACCCTCCCCGCCGGG
GCCGCCGCACCTCCCTCGCCGCCCTTCAGCTTCCAGCTGCCGCGCCGCCTGTCCGACTCGCCCGTGTTCG
ACGCGCCCCCCAGCCCCCCGGACTCGCTGTCGGACCGCGACAGCTACCTAAGCGGCTCCCTGAGCTCCGG
CAGCCTCAGCGGCTCTGAGTCTCCCAGCCTCGACCCTGGCCGCCGCCTGCCAATCTTCAGCCGCCTCTCC
ATCTCCGACGACTGA

Translation (494 aa):
MSTTLLSAFYDVDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRRHSASNLHALAHPAPS
PGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNKENKFRDRSFSENGDRSQHLLHLQQQ
QKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGP
RCHFIHNADERRPAPSGGASGDLRAFGTRDALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLL
DSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPC
AACSSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAG
AAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPGRRLPIFSRLS
ISDD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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