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Report for CCDS18118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18118.1 Public Mus musculus 4 Ccin 23 108 98 CCDS HistoryNCBI Gene:442829Re-query CCDS DB by CCDS ID:18118.1Re-query CCDS DB by GeneID:442829See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18118.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095107.2 ENSMUSP00000092725.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095107.2Link to Ensembl Protein Viewer:ENSMUSP00000092725.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000095107Re-query CCDS DB by Protein ID:ENSMUSP00000092725
Original member Current member NCBI NM_001002787.2 NP_001002787.1 Accepted alive Link to Nucleotide Sequence:NM_001002787.2Link to Protein Sequence:NP_001002787.1Re-query CCDS DB by Nucleotide ID:NM_001002787Re-query CCDS DB by Protein ID:NP_001002787Link to BLAST:NP_001002787.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002787.1 588 Q8CDE2 588 100% 0 0

Chromosomal Locations for CCDS 18118.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43983595 43985361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGAAACTGGAATTCACAGAGAAAAACTACAACAGCTTTGTGCTGCAAAACCTGAACAAACAGAGGAAGC
GTAAAGAGTACTGGGACATGGCCCTGACTGTGGACCATCATGTCTTCTTCGCACATCGCAACGTGCTGGC
TGCCGTCTCTCCACTAGTGAAAAGCCTCATCTCCAGCAACGACATGAAGACCACCGATGAACTCTACATC
ACCATCGACCCCAACTACCTGAGCCCAGCCACGGTGGACCAGCTCCTGGATTACTTCTACAGCGGCAAAG
TGGTGATCTCAGAGCAGAACGTGGAGGAGCTGCTCCGGGGCGCACAGTATTTCAATACCCCACGCCTTCG
GATTCACTGCAATGACTTCCTTATTAAGTCTATTCGCCGCGTCAACTGCTTGCGCTACCTCTTCTTGGCT
GAGCTGTTCGAGCTCAAAGAAGTATCAGACTTGGCCTACTCTGGCATTCGTGACAACTTCCACTTCTGGG
CCAGTCCCGAGGGCTCTATGCACTTCATGCGCTGCCCACCCGTCATCTTCGGTCGCCTGCTCCGGGATGA
AAACCTCCACGTGCTCAACGAGGACCAGGCGCTCAGCGCACTCATCAGTTGGGTGTACTTCCGGAAGGAG
GAGCGGGAAAAATACTTCAAGAAGTTCTTCAATTACATCAATCTCAATGCGGTCTCCAACAAGACGCTGA
TGTTTGCCAGCAACAAGCTGGTTGGCTTGGAGAACAACTCTGCCCACGCGACCTTGATCGAAAGTGTCCT
GATGGACCGCAAGCAGGAGCGCCCGTGCAGCCTGCTGAGCTACCAGCGGAAAGGGGCCCTGCTTGACTCG
GTGGTCATCCTGGGTGGCCAGAAGGCCCACGGTAAGTTCAACGATGGGGTGTTTGCCTATATCATCCAGG
AGAACCTGTGGCTGAAGCTCTCAGAGATGCCATACCGGGCAGCCGCGCTCAGTGCCACTGCTGCTGGCCG
TTACATCTACATATCCGGTGGCACCACTGAGCAGATTTCAGGACTGAAGACAGCGTGGCGGTATGACATG
GACGACAACTCCTGGACCAAGCTACCTGACCTGCCCATTGGGCTTGTCTTCCACACCATGGTGACCTGCG
GGGGAACAGTTTACTCAGTGGGTGGGAGCATTGCCCCACGCCGGTACGTCTCTAACATTTATCGCTATGA
TGAACGCAAGGAAGCCTGGTGCTTGGCGGGGAAGATGAGCATCCCTATGGACGGGACAGCAGTCATCACT
AAGGGTGACCGGAACCTGTACATTGTCACTGGGCGATGCCTGGTGAAGGGCTACATCTCCCGGGTCGGTG
TAGTGGACTGCTTTGACACCTGCACGGGGGAAGTGGTCCAGTGTATCACCTTCCCCATCGAATTCAACCA
CCGGCCCCTGCTCTCGTTCCATCAGGACAACATCCTTCGTGTACACAGCCACCGGCAGAGCGTGGAAATC
AACTTACAGAAGATCAAGGCCAACAAGTCGACAACCTCAGTACCTCTGTTGCCCAACAGTTGTCCCTTGG
ATGTATCCCATGCTATCTGCTCCATTGGAGACAGCAAGGTATTTGTATGTGGGGGTGTCACCACAGCCAG
CGATGTCCAGACCAAGGACTACACCATCAATCCTAATGCTTACTTGCTGGACCAAAAGATAGGTGAATGG
CAGACCCTTGCCTGCCCACCTGAGGCACTGGACTGTCCTGCCTGCTGTCTAGCCAAGCTGCCTTGCAAGA
TTCTTCAAAGAATTTAA

Translation (588 aa):
MKLEFTEKNYNSFVLQNLNKQRKRKEYWDMALTVDHHVFFAHRNVLAAVSPLVKSLISSNDMKTTDELYI
TIDPNYLSPATVDQLLDYFYSGKVVISEQNVEELLRGAQYFNTPRLRIHCNDFLIKSIRRVNCLRYLFLA
ELFELKEVSDLAYSGIRDNFHFWASPEGSMHFMRCPPVIFGRLLRDENLHVLNEDQALSALISWVYFRKE
EREKYFKKFFNYINLNAVSNKTLMFASNKLVGLENNSAHATLIESVLMDRKQERPCSLLSYQRKGALLDS
VVILGGQKAHGKFNDGVFAYIIQENLWLKLSEMPYRAAALSATAAGRYIYISGGTTEQISGLKTAWRYDM
DDNSWTKLPDLPIGLVFHTMVTCGGTVYSVGGSIAPRRYVSNIYRYDERKEAWCLAGKMSIPMDGTAVIT
KGDRNLYIVTGRCLVKGYISRVGVVDCFDTCTGEVVQCITFPIEFNHRPLLSFHQDNILRVHSHRQSVEI
NLQKIKANKSTTSVPLLPNSCPLDVSHAICSIGDSKVFVCGGVTTASDVQTKDYTINPNAYLLDQKIGEW
QTLACPPEALDCPACCLAKLPCKILQRI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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