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Report for CCDS18142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18142.1 Public Mus musculus 4 Tdrd7 23 108 98 CCDS HistoryNCBI Gene:100121Re-query CCDS DB by CCDS ID:18142.1Re-query CCDS DB by GeneID:100121See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18142.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102929.1 ENSMUSP00000099993.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102929.1Link to Ensembl Protein Viewer:ENSMUSP00000099993.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102929Re-query CCDS DB by Protein ID:ENSMUSP00000099993
Original member Current member NCBI NM_001355189.1 NP_001342118.1 Accepted alive Link to Nucleotide Sequence:NM_001355189.1Link to Protein Sequence:NP_001342118.1Re-query CCDS DB by Nucleotide ID:NM_001355189Re-query CCDS DB by Protein ID:NP_001342118Link to BLAST:NP_001342118.1
Original member Current member NCBI NM_146142.2 NP_666254.1 Accepted alive Link to Nucleotide Sequence:NM_146142.2Link to Protein Sequence:NP_666254.1Re-query CCDS DB by Nucleotide ID:NM_146142Re-query CCDS DB by Protein ID:NP_666254Link to BLAST:NP_666254.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342118.1 1086 Q8K1H1 1086 100% 0 0
NP_666254.1 1086 Q8K1H1 1086 100% 0 0

Chromosomal Locations for CCDS 18142.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 45987468 45987674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45989078 45989219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45990050 45990230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45992197 45992270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45994307 45994524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46005117 46005700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46007455 46007641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46010790 46010901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46013066 46013268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46016869 46017003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46018530 46018616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46020805 46020939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46023395 46023505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46025657 46026159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46029647 46029807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46034296 46034516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3261 nt):
ATGCTGGAGGCAGATCTGGTTTCAAAGATGCTAAGGGCTGTCCTGCAGTCTCATAAGAACGGGATCGTAT
TACCCCGTCTCCAAGGAGAGTACCGATCTTTGACTGGAGACTGGATCCCCTTCAAGCAGCTGGGCTACCC
TACTTTGGAAGCCTACCTGAGAAGCGTGCCAGCAGTTGTCAGGATAGAGGCTAGTAGATCTGGAGAGATC
GTCTGCTATGCAGTAGCCTGCACAGAAACTGCAAGGATCGCTCAGCTTGTGGCTCGTCAGAGGACCTCTA
AAAGGAAAATAGGGCGACAAATTAATTGTCAGATGAGAGTGAAGAAAGCCATGCCGTTCTTTCTAGAAGG
AAAGCCAAAGGCAACTCTCAGACAACCAGGATTTGCCTCAGATTATTCCATCAGCAGGAAACCTAATTCA
GCGCTGTTAAGAGACAGAGGAAGCGCCTTGGGAGTTAAGGCTGACGTGGACATGCCGCCGTACCCAGACA
CTCCAGTGCAGAGGCACGCGAGCATGTCTGCCAATAGCAGGTTCAGTCCAAAGTCATCCTTGCCAGCGTC
TTTCCAGACACACATCTCAAGGGCCTGCCCTACGGAAGTCAATGATAATTTAAATCAGACTGTTGAGAAA
CCAAATATCACGCCTCCTGCCTCTTACACTAATAAGATGGATGAGGTTCAAAACCGCATAAAGGAAATAT
TAGACAAGCATAACAATGGCATTTGGATATCTAAGCTTCCACATTTTTACAAAGAGTTTTATAAAGAAGA
CCTTAACCAAGGAGTTTTACAGCAGTTTGAACACTGGCCTCACATTTGCACGGTGGAAAAACCTTGTGGT
GGTGGTCAAGATTCACTTCTTTATCCTGCCAGGAGAGAGCAGCCCCTGAAAAGTGACCAGGACCCTGAGA
AGGAGCTCCCACCTCCACCTCCTGCTCCCAAGCAGGAGGTTCCATCCCAAGGGAGCCCAGCAGTGATGCC
AGATGTCAAGGAGAAAGTGGCAGAACTGCTGGGCAAGTACTCAAGTGGCCTTTGGGCAAGTGCGCTCCCC
AAAGCATTTGAGGACATGTACAAAGTCAAGTTCCCTGAGGATGCCTTAAAAAATCTCGCCTCGCTCTCTG
ATGTGTGCACCATAAACTACATTTCTGGAAACACCCAGAAGGCAATTCTCTATGCGAAACTCCCATTGCC
CACTGACAAGATCTTAAAGGATGAAGGGCAGGCACAAGGAGATTTTGACATCAAGTCGATGATTGAACAA
GAGTATTTGCAGATAGAAAAAAACATGGCTGAAAGTGCTGATGAGTTTCTGGAGGACATAACTGTGCCGC
CTCTGGTAATTCCTACCGAGGCCTCACCGTCTGTGTTGGTGGTTGAGCTGAGCAACACAAATGATGTGGT
TATCAGGTATGTAGGCAAAGACTACTCAGCTGCTCAGGAACTGATGGAGGATGAGATGAAGGAGTTTTAC
AGTAAGAACCCCAGAGTCACACCGATCCAGACTGTGCACGTGGGGCAGCTGCTGGCAGTCAATGCAGAGG
AGGATGCCTGGTTGCGAGCACAGATCATTTCCACGGATGAGAACAAGATAAAGGTGTGCTATGTTGACTA
TGGCTTTTGTGAAAACATTGAGAAGAGTAAAGCGTACAGACTGAACCCACGGTTCTGCTCGCTTTCCTTT
CAAGCCACCAAGTGCAAGCTGGCAGGGTTGGAGGTTCTGAATGATGACCCTGACCTTGTGAAGGCGGTGG
AATCACTAACATGTGGGAAGATCTTTGCTGTGGAGATCCTGGACAAGTCAGATGTCCCGCTGGTGGTGCT
GTACGACACGTCAGGAGAGGACGATATCAACATCAATGCCACCTGCCTCAAGGCAATATGTGACAGATCT
CTACAAGTTCATCTCCAGGTGGATGCCATGTACACAAATGTCAAAGTGACCAACATTTGCTCTGATGGAA
CACTCTACTGCCAGGTGCCCTGCAAGGGTCTGAATAAACTCAATGACCTTCTGCATAAGACAGAGGACTA
CTTCCACTGCAAGCACATGACCTCTGAGTACTTCATCTCGCTACCCTTCTGTGGGAAGATCTGCCTCTTC
CATTGCAAAGGGAAATGGTTACGAGTGGAGATCACTAATGTTCATAGCAGCCGTGCACTCGACGTTCAGT
TCCTGGACTCTGGCAATTCGACATCCGTGAAAGTGTCAGAACTCAGAGAAATCCCACCGCGGTTCCTGCA
GGAAATGCTTGCCATACCCCCTCAGGCTATAAAGTGCTGCTTGGCTGATCTTCCACAGTCCATTGGCATG
TGGACACCAGATGCTGTTCTGTGGTTAAGAGATTCTGTTTTGAATTGCTCGGACTGTAGTATTAAGGTTA
CAAAAATGGATGAGACCAAGGGGGTTGCCTATGTGTACTTATTCACTCCCAATAACTTCCCGGATCCCCA
TCGCAGTATTAACCGGCAGATCACAAACGCAGACCTGTGGAAACATCAGAAGGATGTGTTTCTGAGCGCG
GTGTCTACTGCGGCCAGTTCCCCTGGCAACAGGAATGGTGGCACACCTGCTCCGGGCAGCCCTGCAGAGA
GTCTCAGAAAGAGCCACCCAGAGGTTATCAAGAAGTCTGTCCTGGACCATACCAGCTCTTTCTCCTTGGA
GGAACTGCCCCCTCCTGTCCACCTGTCAAGGTCAGGGGAACACATGGATGTGTATGTGCCTGTGGCCTGT
CACCCAGGCCATTTTGTCATCCAGCCCTGGCAGGAGATCCATAAGCTAGAAGTGCTGATGGAAGAGATGA
TCCTGTACTACAGCGTGTCCGAGGAGCGCCACATAGCGGTGGAGCGAGACCAAGTGTACGCAGCCAAAGT
GGAGAATAAGTGGTACAGGGTACTTTTAAAAGGAATCCTGACCAATGGGCTGGTGTCTGTGTACGAGCTG
GACTACGGCAAGCATGAGCTCGTCAACATAAGGAAAGTGCAGCCCCTAGTGGACGTGTTCCGAAAGCTGC
CCTTCCAGGCGGTCACCGCTCAACTGGCAGGCGTGAAGTGCAGCCAGTGGTCGGAGGAGGCTTCGATGGT
GTTTCGAAATCACGTGGAGAAGAAAGCCCTGGTGGCGTTGGTGCAGACAGTTGTTGAGCACACTAATCCT
TGGGACCGGAAAGTGGTGCTCTATCTCGTAGACACGTCGCTGCCCGACACTGACACCTGGATTCATGACT
TTATGTCACAGTATCTGCTAGAGCTTTCGAAAGTTAATTAA

Translation (1086 aa):
MLEADLVSKMLRAVLQSHKNGIVLPRLQGEYRSLTGDWIPFKQLGYPTLEAYLRSVPAVVRIEASRSGEI
VCYAVACTETARIAQLVARQRTSKRKIGRQINCQMRVKKAMPFFLEGKPKATLRQPGFASDYSISRKPNS
ALLRDRGSALGVKADVDMPPYPDTPVQRHASMSANSRFSPKSSLPASFQTHISRACPTEVNDNLNQTVEK
PNITPPASYTNKMDEVQNRIKEILDKHNNGIWISKLPHFYKEFYKEDLNQGVLQQFEHWPHICTVEKPCG
GGQDSLLYPARREQPLKSDQDPEKELPPPPPAPKQEVPSQGSPAVMPDVKEKVAELLGKYSSGLWASALP
KAFEDMYKVKFPEDALKNLASLSDVCTINYISGNTQKAILYAKLPLPTDKILKDEGQAQGDFDIKSMIEQ
EYLQIEKNMAESADEFLEDITVPPLVIPTEASPSVLVVELSNTNDVVIRYVGKDYSAAQELMEDEMKEFY
SKNPRVTPIQTVHVGQLLAVNAEEDAWLRAQIISTDENKIKVCYVDYGFCENIEKSKAYRLNPRFCSLSF
QATKCKLAGLEVLNDDPDLVKAVESLTCGKIFAVEILDKSDVPLVVLYDTSGEDDININATCLKAICDRS
LQVHLQVDAMYTNVKVTNICSDGTLYCQVPCKGLNKLNDLLHKTEDYFHCKHMTSEYFISLPFCGKICLF
HCKGKWLRVEITNVHSSRALDVQFLDSGNSTSVKVSELREIPPRFLQEMLAIPPQAIKCCLADLPQSIGM
WTPDAVLWLRDSVLNCSDCSIKVTKMDETKGVAYVYLFTPNNFPDPHRSINRQITNADLWKHQKDVFLSA
VSTAASSPGNRNGGTPAPGSPAESLRKSHPEVIKKSVLDHTSSFSLEELPPPVHLSRSGEHMDVYVPVAC
HPGHFVIQPWQEIHKLEVLMEEMILYYSVSEERHIAVERDQVYAAKVENKWYRVLLKGILTNGLVSVYEL
DYGKHELVNIRKVQPLVDVFRKLPFQAVTAQLAGVKCSQWSEEASMVFRNHVEKKALVALVQTVVEHTNP
WDRKVVLYLVDTSLPDTDTWIHDFMSQYLLELSKVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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