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Report for CCDS18299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18299.1 Public Mus musculus 4 Psip1 23 108 98 CCDS HistoryNCBI Gene:101739Re-query CCDS DB by CCDS ID:18299.1Re-query CCDS DB by GeneID:101739See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18299.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030207.14 ENSMUSP00000030207.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030207.14Link to Ensembl Protein Viewer:ENSMUSP00000030207.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030207Re-query CCDS DB by Protein ID:ENSMUSP00000030207
Original member Current member NCBI NM_133948.6 NP_598709.1 Accepted alive Link to Nucleotide Sequence:NM_133948.6Link to Protein Sequence:NP_598709.1Re-query CCDS DB by Nucleotide ID:NM_133948Re-query CCDS DB by Protein ID:NP_598709Link to BLAST:NP_598709.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598709.1 528 Q99JF8-1 528 100% 0 0

Chromosomal Locations for CCDS 18299.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 83457019 83457079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83458075 83458186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83459844 83460057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83460154 83460255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83460459 83460529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83461186 83461241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83463595 83463713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83464925 83465150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83466708 83466783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83468583 83468676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83473040 83473102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83474278 83474382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83476282 83476420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83482457 83482533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83485717 83485788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGACTCGCGATTTCAAACCTGGAGACCTCATCTTCGCCAAGATGAAAGGTTATCCTCATTGGCCAGCTC
GAGTAGATGAAGTTCCTGATGGAGCTGTAAAACCACCCACAAACAAACTACCCATTTTCTTTTTTGGAAC
CCATGAGACTGCTTTTTTAGGACCAAAGGACATATTTCCTTATTCAGAAAATAAGGAAAAGTATGGCAAA
CCAAATAAACGGAAAGGTTTTAATGAAGGATTGTGGGAGATAGATAACAATCCGAAAGTGAAATTTTCAA
GTCAACAGGCATCAACTAAACAATCCAATGCATCGTCTGATGTTGAAGTGGAAGAAAAAGAGACTAACGT
TTCAAAGGAAGACACTGATCAGGAAGAAAAGGCCAGCAATGAGGATGTGACTAAAGCAGTTGACATAACC
ACTCCAAAAGCTGCCAGGCGAGGAAGAAAGAGAAAGGCTGAAAAACAAGTAGACACTGAAGAGGCGGGAA
TGGTGACTGCAGCAACCGCTTCTAATGTGAAAGCAAGTCCTAAGAGAGGACGACCTGCAGCTACTGAAGT
CAAGATTCCCAAACCAAGAGGCAGACCTAAAGTGGTAAAGCAGCCTTGTCCTTCAGACGGTGACATGGTT
ATTGATGAAGATAAAAGTAAAAAAAAGGGACCAGAGGAGAAACAACCTAAAAAGCAGCTTAAAAAAGAGG
AAGAAGGCCAAAAGGAAGAAGAGAAGCCAAGAAAAGAACCAGATAAGAAAGAAGGGAAGAAAGAAGTTGA
ATCTAAACGGAAAAATTTAGCTAAACCAGGGGTTACATCAACCTCTGATTCAGAAGACGAAGACGATCAA
GAGGGTGAAAAGAAGAGAAAGGGTGGAAGGAACTTCCAGGCTGCTCACAGGAGGAACATGCTAAAAGGCC
AACATGAGAAAGAAGCTGGAGATCGGAAACGCAAGCAGGAGGAACAAATGGAAACTGAGCAGCAGAATAA
AGATGAAGGAAAGAAGCCAGAAGTTAAGAAAGTGGAGAAGAAGCGAGAAACATCAATGGATTCTCGACTT
CAAAGGATACATGCTGAAATTAAAAATTCACTCAAAATTGATAATCTAGACGTGAACAGATGCATAGAGG
CCCTGGATGAACTCGCTTCACTTCAGGTAACAATGCAGCAAGCTCAGAAACACACAGAGATGATCACAAC
CCTGAAGAAAATACGGCGGTTCAAAGTCAGTCAAGTTATCATGGAAAAGTCTACAATGTTATATAACAAG
TTTAAGAATATGTTTTTGGTTGGTGAAGGAGATTCAGTCATCACCCAAGTGCTGAACAAATCTCTTGCTG
AACAGAGACAGCATGAGGAAGCAAATAAAACCAAAGATCAGGGGAAGAAAGGGCCAAACAAAAAGCTAGA
GAAGGAACCAACAGGTACGAAGAGCCTAAATGGTGGATCTGATGCTCAAGAGAGTAATCATCCACAGCAT
AATGGTGATAGTAACGAAGACGGCAAAGACAGCCGCGAGGCCAGCAGTAAGACAAAGCCACCTGGAGAAG
AGAGAGAGGCTGAAATATCTCTGAAAGAGTCTACACTAGATAACTAG

Translation (528 aa):
MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGK
PNKRKGFNEGLWEIDNNPKVKFSSQQASTKQSNASSDVEVEEKETNVSKEDTDQEEKASNEDVTKAVDIT
TPKAARRGRKRKAEKQVDTEEAGMVTAATASNVKASPKRGRPAATEVKIPKPRGRPKVVKQPCPSDGDMV
IDEDKSKKKGPEEKQPKKQLKKEEEGQKEEEKPRKEPDKKEGKKEVESKRKNLAKPGVTSTSDSEDEDDQ
EGEKKRKGGRNFQAAHRRNMLKGQHEKEAGDRKRKQEEQMETEQQNKDEGKKPEVKKVEKKRETSMDSRL
QRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNK
FKNMFLVGEGDSVITQVLNKSLAEQRQHEEANKTKDQGKKGPNKKLEKEPTGTKSLNGGSDAQESNHPQH
NGDSNEDGKDSREASSKTKPPGEEREAEISLKESTLDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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