NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18353.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18353.2 Public Mus musculus 4 Zfp352 23 108 98 CCDS HistoryNCBI Gene:236537Re-query CCDS DB by CCDS ID:18353.2Re-query CCDS DB by GeneID:236537See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 18353.2
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon, which appears to be rodent-specific, would result in a protein that is 2 aa longer at the N-terminal.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 18353.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080541.4 ENSMUSP00000079383.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080541.4Link to Ensembl Protein Viewer:ENSMUSP00000079383.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000080541Re-query CCDS DB by Protein ID:ENSMUSP00000079383
Original member Current member EBI ENSMUST00000107129.1 ENSMUSP00000102746.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107129.1Link to Ensembl Protein Viewer:ENSMUSP00000102746.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107129Re-query CCDS DB by Protein ID:ENSMUSP00000102746
Original member Current member NCBI NM_153102.3 NP_694742.2 Accepted alive Link to Nucleotide Sequence:NM_153102.3Link to Protein Sequence:NP_694742.2Re-query CCDS DB by Nucleotide ID:NM_153102Re-query CCDS DB by Protein ID:NP_694742Link to BLAST:NP_694742.2

Chromosomal Locations for CCDS 18353.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 90223625 90225280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGGAGATGGCAGAAAACACAGGTGCTTCCCAGCCAGGACCCTGCAATACACAGCCTTCCCCTGTGGAGT
CCAGCCAGCTTTTCTCAGGTCAGAGCTCAGAGATGCTTACCTGGAAACAAACAGTGATGGAATCTGCATC
CTGTAGCACACAGGAGACAACCTGTACTCAGAACTCAACAGCATACCCAGGAAAAGCCATTGGTTTCCAT
TTTGGACAGCCATTTGAGAACACTTCTTGGAACCAGCAAGTTGTGTCTGCTGAGCAGAAAATATCTCCTG
CAGGTCTTTACCATACACAGCTCAACAGCGCCCCTCAGATATGCCTTCCTCCCCAGAAGACAACAAGAGT
TGACACCAGGGAGACTTTCTACAATGAAGACTACTGGATGAGGACACTGAACTCTGACAAGACTCTCTTG
ACCCAAAATACAGCCATGTGTGAGAATCAGAGGGTTACCTTTGATAATCATCAAATTGCTCTCTATGGAA
GCCATGCTGGCCAGGACCCAAATGTGGGTCACGCCTTTGCTTCTGAACATGACTGGACCTCCTACAACAG
TCATATGACAACCAGGAATGGAGGGCATCTGACTCTCTATGAGAGTCAGATGACAGCACCCAGTTGTAGC
CAGACCCTTCATCCCAATCAAATCATAACATCCTTTTCTGAACAGAATTATTTTGAGGATCAGCAGAGTA
ACCTAGCAGTTAATAATGGATTCTATGGAAATCAGGTGATATTGCCAAATGGATACCAGGCTTTCTATGA
GCCTCAGATGAGAGCTAACTTTGACCAAACAAATGACCAAATGAAATCCTTCAGTGGTCAGAATGTCTGC
AAAGGTCAGGAGAATCTCCTCAGTGGTGAGTGCTCCCTCTCTGGTTATCAGACATCAGGCTACAGATGTG
ACCAGGATTTGATTGTGAATCCTCAGGTGACAAGTCCAATTGGTGGCCAGCCTCTCTCTGACTTTCAGAC
ACAAACCTCAAGTTTTGATACAGCTCTTCCTGGGTCTAAGAGGACAAGACCCAGTGCAGAAGACAACCTG
GCTTGCCCTTTGGAGACAAGTCCCACATCTGAAGAAACACTCTACTTGGGTCAGATGAGGACCTCTGTTG
ATCAAAATTTCTACTCAAGTCAGAATGGAACACCTAATATTAAAGAAAGCCTTGATCCTCAGGTGACTTC
ATTTAGTTTGCAAGCTCCATATGTGGGTGAATCCTCATACCCTTCATGTTCCCCTTTGATTCAAAAACAA
CCTCAGAAAAACTCTTCGGCTTCCAGTTTAGTCCAGAGACAGCATCCAGAGATGAAGTTAGACTTCAAGA
CCCAGAGCCCTGTGTCACAGAAGGACCCTAGTCCTTTGAAGCTCTACTTTTGTACTTATAAGGGTTGTAC
GAAATTTTACAAAAGAGCTTACCACCTCAAAGAACACCAGAAGAAACACACTGATAAGAGGAAATACGGG
TGTGATGAGCCTGGGTGCACATGGTCGTTTTTCCGCCTATGTGATCTCAACAGACACAAAGAAAAGCACA
ATGGTGAGAGGTTCTACGCTTGTCCCTTGTGCTCTACAAACTATTCCAGACTGCTTTATCTCAAAAAGCA
TCTGGAGAAGAAACATGCTCAAGCACAACCCACCACTGCAACCTGA

Translation (551 aa):
MEMAENTGASQPGPCNTQPSPVESSQLFSGQSSEMLTWKQTVMESASCSTQETTCTQNSTAYPGKAIGFH
FGQPFENTSWNQQVVSAEQKISPAGLYHTQLNSAPQICLPPQKTTRVDTRETFYNEDYWMRTLNSDKTLL
TQNTAMCENQRVTFDNHQIALYGSHAGQDPNVGHAFASEHDWTSYNSHMTTRNGGHLTLYESQMTAPSCS
QTLHPNQIITSFSEQNYFEDQQSNLAVNNGFYGNQVILPNGYQAFYEPQMRANFDQTNDQMKSFSGQNVC
KGQENLLSGECSLSGYQTSGYRCDQDLIVNPQVTSPIGGQPLSDFQTQTSSFDTALPGSKRTRPSAEDNL
ACPLETSPTSEETLYLGQMRTSVDQNFYSSQNGTPNIKESLDPQVTSFSLQAPYVGESSYPSCSPLIQKQ
PQKNSSASSLVQRQHPEMKLDFKTQSPVSQKDPSPLKLYFCTYKGCTKFYKRAYHLKEHQKKHTDKRKYG
CDEPGCTWSFFRLCDLNRHKEKHNGERFYACPLCSTNYSRLLYLKKHLEKKHAQAQPTTAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH