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Report for CCDS18359.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
18359.1 |
Public |
Mus musculus |
4 |
Plaa |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:18786](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:18359.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:18786](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 18359.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000107107.8 |
ENSMUSP00000102724.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000107107.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000102724.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000107107](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000102724](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_172695.2 |
NP_766283.2 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_172695.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_766283.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_172695](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_766283](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_172695.3 |
NP_766283.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_172695.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_766283.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_172695](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_766283](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_766283.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_766283.2 |
794 |
P27612 |
794 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 18359.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2385 nt): ATGGCGAGCGGCGCCTCCAGATACCGGCTGAGCTGCTCGCTCCCGGGCCACGAACTGGACGTGAGGGGCC TGGTGTGCTGCCTCTACCCGCCGGGAGCCTTTGTGTCTGTGTCCCGGGATCGGACCACCCGCCTCTGGGC TCCAGACAGTCCTAACAGGGGCTTTACAGAAATGCACTGTATGAGCGGCCACTCTAATTTTGTGTCTTGT GTGTGTATCATACCCTCAAGTGACATATATCCTCATGGACTGATTGCCACTGGAGGAAATGACCACAATA TTTGCATTTTCTCGCTGGACAGTCCAATGCCACTTTATATTTTAAAGGGTCACAAAGATACTGTTTGTAG TCTTTCTTCTGGAAAATTTGGGACATTACTTAGTGGCTCATGGGACACCACTGCTAAAGTCTGGCTGAAT GACAAATGCATGATGACATTACAGGGTCATACAGCCGCAGTATGGGCAGTAAAGATTTTACCTGAACAGG GCTTAATGCTAACTGGATCAGCAGACAAGACCATTAAACTATGGAAGGCTGGAAGATGTGAGAGGACTTT TTTAGGGCATGAAGACTGTGTAAGAGGCTTGGCAATCTTGAGTGAGACAGAATTTCTTTCCTGTGCAAAC GATGCTAGTATTAGAAGGTGGCAGATCACTGGCGAGTGTCTGGAAGTATACTTTGGACATACAAATTATA TTTATAGCATATCTGTCTTTCCAAACTCCAAAGATTTTGTGACCACTGCAGAAGACAGATCTCTAAGAAT ATGGAAACATGGTGAATGCGCCCAAACAATCCGACTTCCAGCTCAGTCTATATGGTGTTGCTGCGTACTG GAAAATGGTGACATTGTGGTTGGTGCGAGTGATGGTATTATTAGGGTGTTTACAGAGTCAGAGGAGCGGA CAGCAAGTGCTGAGGAAATCAAAGCTTTTGAGAGAGAGCTCTCTCAGGCAACTATCGATTCCAAAACTGG TGACTTGGGGGATATTAATGCGGAGCAGCTTCCTGGGAGGGAACATCTCAGTGAGCCAGGTACTAGAGAA GGACAGACTCGTCTAATCAGAGATGGAGAGAGAGTTGAAGCCTATCAGTGGAGTGTTAGTGACGGGAGGT GGATAAAAATTGGTGATGTTGTTGGCTCATCTGGTGCTAATCAGCAAACATCTGGAAAAGTTTTATATGA AGGGAAAGAATTTGATTATGTTTTCTCAATCGATGTGAATGAAGGTGGACCATCGTATAAATTACCATAT AATGTCAGTGACGATCCCTGGCTAGTTGCATACAACTTCTTGCAGAAAAATGATTTGAATCCCATGTTTC TGGATCAGGTGGCTAAATTTATTATTGATAACACAAAAGGTCAAACACTGGGACTTGGGAATACCAGTTT TTCAGATCCGTTTACAGGTGGTGGTCGCTATGTTCCAGGAACTTCAGGACCTTCCAACACAGTGCAGACA GCAGATCCTTTCACAGGTGCTGGGCGTTACATGCCAGGTTCTGCAGGTATGGACACCACCATGACTGGAG TTGATCCATTTACAGGGAACAGTGCCTACCGATCAGCTGCATCTAAAACAGTGAACATTTATTTCCCCAA AAAAGAAGCTCTTACCTTTGACCAAGCAAACCCTACACAAATATTAGGAAAACTGAAGGAACTTAATGGA ACTGCACCTGAAGAGAAGAAGCTAACTGAAGACGACTTAGTACTTCTTGAAAAGATACTGTCCCTGATTT GTAATAATTCCTCAGAAAAGCCAACGGCCCAGCAACTTCAGATTTTGTGGAAAGCTATCAACTGGCCTGA AGACATTGTCTTTCCTGCACTTGACATTCTTCGCCTATCGATTAAGCATCCCAATGTGAATGAGAATTTC TGCAATGAAAAAGGAGACCAGTTCAGCAGCCATCTTATCAACCTTCTGAACCCCAAAGGAAAGCCAGCAA ACCAGCTGCTTGCTCTTAGGACTTTTTGCAATTGCTTTGTTAGTCAGGCAGGACAAAAGCTCATGATGTC CCAGAGGGAGTCACTGATGTCACATGCAATAGAACTGAAATCCGGGAGTAATAAGAACATTCATATTGCT CTGGCTACATTGACCTTGAACTATTCTGTTTGTTTCCATAAAGACCATAACATTGAAGGGAAAGCTCAAT GCCTCTCAGTAATTAGCACAATCTTGGAAGTTGTGCAAGACCTAGAAGCCACGTTTAGACTCCTTGTGGC TCTTGGGACACTTATCAGTGATGATTCAAATGCTATACAATTAGCCAAATCTTTAGGTGTTGATTCTCAA ATAAAAAAGTATGTCTCCGTATCAGAGCCAGCTAAAGTGAGTGAATGCTGTAGACTTGTCTTACATTTGC TGTAG
Translation (794 aa): MASGASRYRLSCSLPGHELDVRGLVCCLYPPGAFVSVSRDRTTRLWAPDSPNRGFTEMHCMSGHSNFVSC VCIIPSSDIYPHGLIATGGNDHNICIFSLDSPMPLYILKGHKDTVCSLSSGKFGTLLSGSWDTTAKVWLN DKCMMTLQGHTAAVWAVKILPEQGLMLTGSADKTIKLWKAGRCERTFLGHEDCVRGLAILSETEFLSCAN DASIRRWQITGECLEVYFGHTNYIYSISVFPNSKDFVTTAEDRSLRIWKHGECAQTIRLPAQSIWCCCVL ENGDIVVGASDGIIRVFTESEERTASAEEIKAFERELSQATIDSKTGDLGDINAEQLPGREHLSEPGTRE GQTRLIRDGERVEAYQWSVSDGRWIKIGDVVGSSGANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPY NVSDDPWLVAYNFLQKNDLNPMFLDQVAKFIIDNTKGQTLGLGNTSFSDPFTGGGRYVPGTSGPSNTVQT ADPFTGAGRYMPGSAGMDTTMTGVDPFTGNSAYRSAASKTVNIYFPKKEALTFDQANPTQILGKLKELNG TAPEEKKLTEDDLVLLEKILSLICNNSSEKPTAQQLQILWKAINWPEDIVFPALDILRLSIKHPNVNENF CNEKGDQFSSHLINLLNPKGKPANQLLALRTFCNCFVSQAGQKLMMSQRESLMSHAIELKSGSNKNIHIA LATLTLNYSVCFHKDHNIEGKAQCLSVISTILEVVQDLEATFRLLVALGTLISDDSNAIQLAKSLGVDSQ IKKYVSVSEPAKVSECCRLVLHLL
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