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Report for CCDS1844.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1844.2 Public Homo sapiens 2 FSHR 24 110 108 CCDS HistoryNCBI Gene:2492Re-query CCDS DB by CCDS ID:1844.2Re-query CCDS DB by GeneID:2492See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 1844.1
The coding region has been updated to represent an alternative splicing pattern that is better supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1844.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304421.8 ENSP00000306780.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000304421.8Link to Ensembl Protein Viewer:ENSP00000306780.4Re-query CCDS DB by Nucleotide ID:ENST00000304421Re-query CCDS DB by Protein ID:ENSP00000306780
Original member Current member NCBI NM_181446.3 NP_852111.2 Accepted alive Link to Nucleotide Sequence:NM_181446.3Link to Protein Sequence:NP_852111.2Re-query CCDS DB by Nucleotide ID:NM_181446Re-query CCDS DB by Protein ID:NP_852111Link to BLAST:NP_852111.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852111.2 669 P23945-3 669 100% 0 0

Chromosomal Locations for CCDS 1844.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 48962733 48963966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48968698 48968883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48982912 48982986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48983098 48983166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48990566 48990637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49017489 49017563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49020086 49020160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49068219 49068290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49154266 49154417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGGCCCTGCTCCTGGTCTCTTTGCTGGCATTCCTGAGCTTGGGCTCAGGATGTCATCATCGGATCTGTC
ACTGCTCTAACAGGGTTTTTCTCTGCCAAGAGAGCAAGGTGACAGAGATTCCTTCTGACCTCCCGAGGAA
TGCCATTGAACTGAGGTTTGTCCTCACCAAGCTTCGAGTCATCCAAAAAGGTGCATTTTCAGGATTTGGG
GACCTGGAGAAAATAGAGATCTCTCAGAATGATGTCTTGGAGGTGATAGAGGCAGATGTGTTCTCCAACC
TTCCCAAATTACATGAAATTAGAATTGAAAAGGCCAACAACCTGCTCTACATCAACCCTGAGGCCTTCCA
GAACCTTCCCAACCTTCAATATCTGTTAATATCCAACACAGGTATTAAGCACCTTCCAGATGTTCACAAG
ATTCATTCTCTCCAAAAAGTTTTACTATGGCTGAATAAGAATGGGATTCAAGAAATACACAACTGTGCAT
TCAATGGAACCCAACTAGATGAGCTGAATCTAAGCGATAATAATAATTTAGAAGAATTGCCTAATGATGT
TTTCCACGGAGCCTCTGGACCAGTCATTCTAGATATTTCAAGAACAAGGATCCATTCCCTGCCTAGCTAT
GGCTTAGAAAATCTTAAGAAGCTGAGGGCCAGGTCGACTTACAACTTAAAAAAGCTGCCTACTCTGGAAA
AGCTTGTCGCCCTCATGGAAGCCAGCCTCACCTATCCCAGCCATTGCTGTGCCTTTGCAAACTGGAGACG
GCAAATCTCTGAGCTTCATCCAATTTGCAACAAATCTATTTTAAGGCAAGAAGTTGATTATATGACTCAG
GCTAGGGGTCAGAGATCCTCTCTGGCAGAAGACAATGAGTCCAGCTACAGCAGAGGATTTGACATGACGT
ACACTGAGTTTGACTATGACTTATGCAATGAAGTGGTTGACGTGACCTGCTCCCCTAAGCCAGATGCATT
CAACCCATGTGAAGATATCATGGGGTACAACATCCTCAGAGTCCTGATATGGTTTATCAGCATCCTGGCC
ATCACTGGGAACATCATAGTGCTAGTGATCCTAACTACCAGCCAATATAAACTCACAGTCCCCAGGTTCC
TTATGTGCAACCTGGCCTTTGCTGATCTCTGCATTGGAATCTACCTGCTGCTCATTGCATCAGTTGATAT
CCATACCAAGAGCCAATATCACAACTATGCCATTGACTGGCAAACTGGGGCAGGCTGTGATGCTGCTGGC
TTTTTCACTGTCTTTGCCAGTGAGCTGTCAGTCTACACTCTGACAGCTATCACCTTGGAAAGATGGCATA
CCATCACGCATGCCATGCAGCTGGACTGCAAGGTGCAGCTCCGCCATGCTGCCAGTGTCATGGTGATGGG
CTGGATTTTTGCTTTTGCAGCTGCCCTCTTTCCCATCTTTGGCATCAGCAGCTACATGAAGGTGAGCATC
TGCCTGCCCATGGATATTGACAGCCCTTTGTCACAGCTGTATGTCATGTCCCTCCTTGTGCTCAATGTCC
TGGCCTTTGTGGTCATCTGTGGCTGCTATATCCACATCTACCTCACAGTGCGGAACCCCAACATCGTGTC
CTCCTCTAGTGACACCAGGATCGCCAAGCGCATGGCCATGCTCATCTTCACTGACTTCCTCTGCATGGCA
CCCATTTCTTTCTTTGCCATTTCTGCCTCCCTCAAGGTGCCCCTCATCACTGTGTCCAAAGCAAAGATTC
TGCTGGTTCTGTTTCACCCCATCAACTCCTGTGCCAACCCCTTCCTCTATGCCATCTTTACCAAAAACTT
TCGCAGAGATTTCTTCATTCTGCTGAGCAAGTGTGGCTGCTATGAAATGCAAGCCCAAATTTATAGGACA
GAAACTTCATCCACTGTCCACAACACCCATCCAAGGAATGGCCACTGCTCTTCAGCTCCCAGAGTCACCA
GTGGTTCCACTTACATACTTGTCCCTCTAAGTCATTTAGCCCAAAACTAA

Translation (669 aa):
MALLLVSLLAFLSLGSGCHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFG
DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK
IHSLQKVLLWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY
GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQ
ARGQRSSLAEDNESSYSRGFDMTYTEFDYDLCNEVVDVTCSPKPDAFNPCEDIMGYNILRVLIWFISILA
ITGNIIVLVILTTSQYKLTVPRFLMCNLAFADLCIGIYLLLIASVDIHTKSQYHNYAIDWQTGAGCDAAG
FFTVFASELSVYTLTAITLERWHTITHAMQLDCKVQLRHAASVMVMGWIFAFAAALFPIFGISSYMKVSI
CLPMDIDSPLSQLYVMSLLVLNVLAFVVICGCYIHIYLTVRNPNIVSSSSDTRIAKRMAMLIFTDFLCMA
PISFFAISASLKVPLITVSKAKILLVLFHPINSCANPFLYAIFTKNFRRDFFILLSKCGCYEMQAQIYRT
ETSSTVHNTHPRNGHCSSAPRVTSGSTYILVPLSHLAQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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