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Report for CCDS18454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18454.1 Public Mus musculus 4 Cc2d1b 23 108 98 CCDS HistoryNCBI Gene:319965Re-query CCDS DB by CCDS ID:18454.1Re-query CCDS DB by GeneID:319965See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18454.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030320.12 ENSMUSP00000030320.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030320.12Link to Ensembl Protein Viewer:ENSMUSP00000030320.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030320Re-query CCDS DB by Protein ID:ENSMUSP00000030320
Original member Current member NCBI NM_177045.3 NP_796019.1 Accepted alive Link to Nucleotide Sequence:NM_177045.3Link to Protein Sequence:NP_796019.1Re-query CCDS DB by Nucleotide ID:NM_177045Re-query CCDS DB by Protein ID:NP_796019Link to BLAST:NP_796019.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796019.1 848 Q8BRN9 848 100% 0 0

Chromosomal Locations for CCDS 18454.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 108621529 108621594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108623451 108623595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108624444 108624547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108624846 108625004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108625408 108625533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108625655 108625814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108625981 108626153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108626301 108626376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108626480 108626590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108626674 108626804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108627048 108627120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108627294 108627418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108627831 108627948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108628030 108628202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108628583 108628708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108629574 108629632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108629717 108629833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108630092 108630165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108630278 108630336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108630544 108630595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108631596 108631695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108631835 108631925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108633171 108633299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2547 nt):
ATGCCAGGGCCAAGACCTCGGAAGGGCCCTAAGACCAGTGGCCAGGGTGCTGAGACTGCCAAGCAGCTGG
GGCTTTTTGTGGAGTTCAACCCTGAGGACATGCTCCTGGGGGTGGATGAGACTGAAGATGATGGAGACCT
GGAGGCTGAGTTACTGGCACTCACAGGGGAAACAGCGAGCAGGAGCAGGAAGCCAGCACCCAAGGGGCAG
GCTCCACTGCCCATGGCCCACATTGAGAAGCTGGCAGCAGACTGTATGCGAGATGTGGAGGAGGATGAAG
AAGAGGAAGGGCTGGAGGACGATGCAGACCTTCTGACAGAGCTGCAGGAGGTCCTGGGTGAGGATGAAGA
AGCGGGTCTGCTGGACGGCAGTGAGGCAGCAAGTCCAGACCTCTGTGAGGAGAAGACTTGGGACAACACT
GAACTACCTGTAGAGCAGGCAGCCTGCCAACAGGCAGTACCTGCTGCAGCTCAGGCTGGAGGGCCTCGGG
GGCTGCAGGCTTTGCTGGAGGAACGGATCCGTAACTACCGGGAGGCCGCAGCCAGTGCCAAGGAGGCTGG
TGAAGCTGCCAAAGCCCGGCGCTGTGAGCGAGGCCTAAAGACTCTGCAGTCCCAGCTTGCCACTGTGAGG
AAAGGCGGGAAGATCTGTGAGGATGAGATCCCACCTCCAGTAGCCTTGGGCAAAAGGCCCCCAGCCCCCC
AGGAAAGAGCCATCAAGAACCCTGAGATAGACTCTCCAGGTCCCTGTGCCATGGAGCCAGGCAACCTTTC
CCAGCCCGAGTCCAGCCTCCCTGCCATTGCTCCCTTGCCTGATTCAGACCCAGACCCACAAGCCCTGCTG
TTAGCCCGACAGAGAGAGTACAAGGCGGCTGCTCTCGATGCCAAGCGGGCTGGAGATCTAGACCGTGCTC
GGGAGCTCATGAGGATCGGGAAGAGATTTGGTACTGTCCTAGAGGCCCTGGAAAAGGGTCAGCCTGTGGA
CCTGAGTGGCATGCCCCCAGCACCTGCGGATCTGAAGGCCCTCCCCCAGGCTTCTAAGGCCTCCTCAGCA
ACCCAAGGCCTGTCCCCAGCAGTAGAGCAAATGCAGCCAGTGATGGCCTCTGACCTCCCAGCCACCCCAG
TGGCCCCTGCGGAGCCAACAACAGTGCTGGATGCTTTACAGCAAAGGCTGAACAAGTATCGTGAGGCAGG
CATCCAGGCCCGGGCCAATGGGGATGAGCGCAAGGCCAGGATGCACGATCGCATTGCCAAGCAATATCAG
GATGCTGTTCGAGCTCATCAGGCAGGACAGAAAGTTGACTTTGCCGAGTTACCTGTTCCTCCAGGATTTC
CTCCCATCCCTGGCCTGGAGCCCAGGAAAGGTAGTGAGCAGGATTCAGTGGCAGCAACTTTAGCAACTGC
CCAAAAACTGGCCTCAGAAGATGCAGCCCTGGTAGATGACGACGAGGAGAGTGACACTCCAGCACAGGCC
CCATTGGCCAAGAAGCCAGCGCAGACTCTGGTCTCTCCATCCCATCTTCTGACTGAGCCCAAGGCTTCAA
GTTCTAAGGAGTCACTGAGTCCATCTGTTCGGGAGCAGGTGACACTGCTGGAGGCTCGGAAACTGCAATA
CCAGCGAGCAGCTCTGCAAGCCAAGCGCAGGCAGGATCTTGAGCAGGCCAAATCCCACTTACGAGTAGCT
AAAAGTCTTGAGGCTCAGATCATCCAGGCCCGAGCTGGTCAACCCATTGATCTCTCCAAGGTGCCTTCAC
CGTTGACAGATGAAGAGGGGGACTTCATCCTCATTCACCATGAGGATCTGCGACTCTCCCAGAAGGCTGA
GGAGGTGTATGCCCAGCTACAGAAAATGCTCCAGGAGCAGCAAGCGAAGTGCCTGCTATTCTCCAAGCAG
TACATGCACCAGGGAAATGTGGCTGAGACCACTCGGTTTGAGAGGCTTGCGGAGGACCGAAAGAAACAGC
TTGAGATCCTGCAGCTAGCCCAAGCCCAGGGCCTTGACCCTCCTAGTCATCACTTTGAGCTGAAGACATT
CCAGACTGTGAGGATCTTCTCAGAACTCAACAGCACAGAAATGCATCTGATCATCGTGCGGGGAATGAAC
CTCCCAGCCCCGCCAGGAGTGACTCCGGATGACTTGGATGCTTTTGTACGGTTTGAGTTTCACTACCCTA
ACTCGGACCAGGCTCAAAAAAGCAAAACAGCTGTGGTAAAAAATACCAATTCTCCAGAATTTGAACAAGT
TTTCAAGCTAAACATCAATCGAAACCACCGAGGCTTTAGGAGAGTGATCCAGAGCAAAGGAATCAAATTT
GAGATCTTCCACAAAGGATCCTTTTTTAGAAGTGACAAGCTGGTTGGCACAGCACACTTGAAATTGGAAA
GGCTGGAGAAGGAGTGTGAGATCAGAGAGATCATGGAGGTTTTGGATGGCAGAAAGCCCACTGGGGGGAA
GCTGGAGGTGAAGGTGAGGCTTCGGGAGCCTCTGAGCAGCCAGGACGTGCAGACGGTCACTGAGAACTGG
CTGGTCCTGGAGCCTCGGGGCCTGTGA

Translation (848 aa):
MPGPRPRKGPKTSGQGAETAKQLGLFVEFNPEDMLLGVDETEDDGDLEAELLALTGETASRSRKPAPKGQ
APLPMAHIEKLAADCMRDVEEDEEEEGLEDDADLLTELQEVLGEDEEAGLLDGSEAASPDLCEEKTWDNT
ELPVEQAACQQAVPAAAQAGGPRGLQALLEERIRNYREAAASAKEAGEAAKARRCERGLKTLQSQLATVR
KGGKICEDEIPPPVALGKRPPAPQERAIKNPEIDSPGPCAMEPGNLSQPESSLPAIAPLPDSDPDPQALL
LARQREYKAAALDAKRAGDLDRARELMRIGKRFGTVLEALEKGQPVDLSGMPPAPADLKALPQASKASSA
TQGLSPAVEQMQPVMASDLPATPVAPAEPTTVLDALQQRLNKYREAGIQARANGDERKARMHDRIAKQYQ
DAVRAHQAGQKVDFAELPVPPGFPPIPGLEPRKGSEQDSVAATLATAQKLASEDAALVDDDEESDTPAQA
PLAKKPAQTLVSPSHLLTEPKASSSKESLSPSVREQVTLLEARKLQYQRAALQAKRRQDLEQAKSHLRVA
KSLEAQIIQARAGQPIDLSKVPSPLTDEEGDFILIHHEDLRLSQKAEEVYAQLQKMLQEQQAKCLLFSKQ
YMHQGNVAETTRFERLAEDRKKQLEILQLAQAQGLDPPSHHFELKTFQTVRIFSELNSTEMHLIIVRGMN
LPAPPGVTPDDLDAFVRFEFHYPNSDQAQKSKTAVVKNTNSPEFEQVFKLNINRNHRGFRRVIQSKGIKF
EIFHKGSFFRSDKLVGTAHLKLERLEKECEIREIMEVLDGRKPTGGKLEVKVRLREPLSSQDVQTVTENW
LVLEPRGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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