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Report for CCDS18471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18471.1 Public Mus musculus 4 Elavl4 23 108 98 CCDS HistoryNCBI Gene:15572Re-query CCDS DB by CCDS ID:18471.1Re-query CCDS DB by GeneID:15572See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18471.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106597.9 ENSMUSP00000102207.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106597.9Link to Ensembl Protein Viewer:ENSMUSP00000102207.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106597Re-query CCDS DB by Protein ID:ENSMUSP00000102207
Original member NCBI NM_010488.4 NP_034618.2 Updated not alive Link to Nucleotide Sequence:NM_010488.4Link to Protein Sequence:NP_034618.2Re-query CCDS DB by Nucleotide ID:NM_010488Re-query CCDS DB by Protein ID:NP_034618
Current member NCBI NM_010488.5 NP_034618.2 Accepted alive Link to Nucleotide Sequence:NM_010488.5Link to Protein Sequence:NP_034618.2Re-query CCDS DB by Nucleotide ID:NM_010488Re-query CCDS DB by Protein ID:NP_034618Link to BLAST:NP_034618.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034618.2 385 Q61701-1 385 100% 0 0

Chromosomal Locations for CCDS 18471.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 110206332 110206701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110209740 110209778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110211426 110211651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110213128 110213281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110226545 110226648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110251281 110251521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110286470 110286493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGAGTGGAATGGCTTGAAGATGATAATTAGCACCATGGAGCCTCAGGTGTCAAATGGACCGACATCCA
ATACAAGCAATGGACCCTCCAGCAACAACAGAAACTGTCCTTCTCCCATGCAGACAGGCGCCGCCACAGA
TGACAGCAAAACCAACCTCATCGTCAACTATTTACCCCAGAATATGACCCAAGAGGAATTCAGGAGTCTC
TTTGGGAGCATTGGTGAAATAGAATCCTGCAAACTCGTGAGAGACAAAATCACAGGACAGAGTTTAGGGT
ATGGATTTGTTAACTATATTGATCCAAAGGATGCAGAGAAAGCCATCAACACTTTAAATGGACTCAGACT
CCAGACCAAAACCATAAAGGTGTCCTACGCCCGCCCAAGCTCGGCCTCGATCAGGGATGCTAACCTGTAT
GTTAGTGGCCTTCCCAAGACCATGACCCAGAAGGAGCTGGAGCAGCTTTTCTCTCAATACGGTCGCATCA
TCACCTCACGCATCCTGGTTGATCAAGTCACAGGGGTCTCTAGAGGGGTGGGATTCATCCGCTTTGATAA
GAGGATTGAGGCAGAAGAAGCCATCAAAGGACTGAATGGCCAGAAGCCCAGCGGTGCTACAGAACCGATT
ACTGTGAAGTTTGCCAACAACCCCAGCCAGAAGTCCAGCCAGGCCCTGCTCTCCCAGCTGTACCAGTCCC
CCAACAGGCGATACCCTGGCCCTCTCCACCACCAGGCTCAAAGATTCAGGCTGGACAATTTGCTTAATAT
GGCCTATGGCGTAAAGAGACTGATGTCTGGACCAGTCCCCCCTTCTGCTTGTCCCCCCAGGTTCTCCCCA
ATCACCATTGACGGGATGACAAGTCTTGTGGGAATGAACATCCCTGGTCACACAGGGACAGGCTGGTGCA
TCTTCGTCTATAACCTGTCCCCTGATTCTGATGAGAGTGTCCTCTGGCAGCTCTTTGGCCCCTTTGGCGC
AGTGAACAACGTCAAGGTCATCCGTGACTTCAACACCAACAAGTGCAAGGGATTCGGCTTCGTCACCATG
ACCAACTACGATGAGGCAGCCATGGCCATCGCCAGCCTCAATGGCTATCGCCTGGGAGACAGAGTGTTGC
AAGTTTCCTTTAAAACCAACAAAGCCCACAAATCCTGA

Translation (385 aa):
MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSL
FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY
VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI
TVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSP
ITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTM
TNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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