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Report for CCDS18496.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18496.2 Public Mus musculus 4 Atpaf1 23 108 98 CCDS HistoryNCBI Gene:230649Re-query CCDS DB by CCDS ID:18496.2Re-query CCDS DB by GeneID:230649See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 18496.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 18496.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176047.7 ENSMUSP00000135831.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176047.7Link to Ensembl Protein Viewer:ENSMUSP00000135831.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176047Re-query CCDS DB by Protein ID:ENSMUSP00000135831
Original member Current member NCBI NM_181040.5 NP_851383.2 Accepted alive Link to Nucleotide Sequence:NM_181040.5Link to Protein Sequence:NP_851383.2Re-query CCDS DB by Nucleotide ID:NM_181040Re-query CCDS DB by Protein ID:NP_851383Link to BLAST:NP_851383.2

Chromosomal Locations for CCDS 18496.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 115784979 115785304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115788262 115788370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115790581 115790631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115791223 115791285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115795404 115795454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115796755 115796802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115797966 115798061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115800318 115800425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115811002 115811196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGGAGCAGGCGCGCGGGCCGGGGGCCGAGGCTGACGCGCCCGAGGAGGAGGAGGGGGAGTCGCAGGCGG
CCATGGCGGCGGTAGTGTCCGCTGCGGGTGGAGCGTGCCCCGCAGTCCTGCAGGTGGCGGGTCTCTACCG
AGGCCTGTGTGCAGTGCGCAGCCGCGCCCTGGGGCTGGGGTTCGTGTCACCGGCACAGTTGCGCGTGTTC
CCGGTGCGCCGGGGCTCGGGCCTGCCCCCCGAGGGAGCAGACGGCAGTGGGGTCAGCGAGCTGGAAGCGA
ACCCCTTCTACGACCGCTACCGGGACAAGATCCAGCAGCTGCGCAGGTCTGACCCAGCGGCCTTTGAGTC
CCGCCTGGAGAAGCGCAGTGAGTTCCGAAAGCAGCCAGTGGGGCACTCCAAACAAAGTGATTTTATCAAG
TGTATGGAGCAGAAGACAGATGCCTTGGGGAAACAGCCTGTGAGCAAAGGATTCACTAAGGACAAGACTC
TCAGTTCAGTCTTCAACGTTGAGATGGTGAAAGACAAAACTGCGGAGGAAATAAAACAGATTTGGCAGCA
GTATTTTTCAGCAAAAGACACAGTCTACGCAGTTATTCCTAAAGAGAAGTTTGATTTGATCTGGAACAGG
GCTCAGTCCTGCCCAACATTTCTTTGTGCACTACCAAGAAGGGATGGTTATGAGTTCTTTGTAGGACAAT
GGACAGGTACAGAGCTCCACTTCACTGCACTTATAAATATTCAGACCCGAGGGGATGCAGCAGCCAGCCA
GCTGATTTTATATCACTATCCTGAACTTAAGGAAGAAAAGGGCATAGTGCTGATGACAGCAGAAATGGAC
TCCACATTTCTGAATGTTGTGGAGGCACAGTGCATCGCCAATCAGGTTCAGCTCTTCTACGCCACCGATC
GGAAGGAGATCTATGGGCTAGTAGAGACCTTTAACTTCAGACCAAATGAGTTCAAATATATGTCTGTCAT
CGCTGAGTTGGAGCAAAGTGGACTTGGAGCCGAACTGAAACGTGCCCAGAACCAAGATAAGACTTAG

Translation (348 aa):
MEQARGPGAEADAPEEEEGESQAAMAAVVSAAGGACPAVLQVAGLYRGLCAVRSRALGLGFVSPAQLRVF
PVRRGSGLPPEGADGSGVSELEANPFYDRYRDKIQQLRRSDPAAFESRLEKRSEFRKQPVGHSKQSDFIK
CMEQKTDALGKQPVSKGFTKDKTLSSVFNVEMVKDKTAEEIKQIWQQYFSAKDTVYAVIPKEKFDLIWNR
AQSCPTFLCALPRRDGYEFFVGQWTGTELHFTALINIQTRGDAAASQLILYHYPELKEEKGIVLMTAEMD
STFLNVVEAQCIANQVQLFYATDRKEIYGLVETFNFRPNEFKYMSVIAELEQSGLGAELKRAQNQDKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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