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Report for CCDS18758.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18758.2 Public Mus musculus 4 Rps6ka1 23 108 98 CCDS HistoryNCBI Gene:20111Re-query CCDS DB by CCDS ID:18758.2Re-query CCDS DB by GeneID:20111See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 18758.1
The coding region has been updated to represent an alternative splice site that is more supported by the available transcript and homology data, resulting in the addition of an internal 11 aa segment to the protein.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 18758.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105894.10 ENSMUSP00000101514.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105894.10Link to Ensembl Protein Viewer:ENSMUSP00000101514.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000105894Re-query CCDS DB by Protein ID:ENSMUSP00000101514
Original member Current member NCBI NM_009097.5 NP_033123.2 Accepted alive Link to Nucleotide Sequence:NM_009097.5Link to Protein Sequence:NP_033123.2Re-query CCDS DB by Nucleotide ID:NM_009097Re-query CCDS DB by Protein ID:NP_033123Link to BLAST:NP_033123.2

Chromosomal Locations for CCDS 18758.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133848052 133848174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133848522 133848659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133850701 133850818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133850938 133851014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133851165 133851326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133860053 133860211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133860511 133860600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133860817 133860942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133861416 133861546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133863648 133863750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133864006 133864070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133865025 133865113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133865361 133865431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133865763 133865905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133866362 133866399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133867123 133867229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133869266 133869345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133869499 133869579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133871550 133871631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133871887 133872003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133880917 133880961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133887570 133887632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2208 nt):
ATGCCGCTCGCCCAGCTCAAGGAGCCCTGGCCGCTCATGGAGCTGGTGCCGCTGGACCCGGAGAATGGCC
AGACTTCAGGGGAAGAAGCTGGACTTCAGCCATCCAAGGATGAGGCCATCCTCAAGGAGATCTCCATCAC
ACACCACGTCAAGGCTGGCTCTGAGAAGGCCGATCCATCCCAGTTTGAGCTCCTCAAGGTTCTGGGCCAA
GGATCCTTTGGCAAAGTCTTCCTGGTACGCAAGGTCACCCGGCCTGACAGTGGGCACTTGTATGCCATGA
AAGTATTAAAGAAGGCCACGCTGAAAGTGCGTGACCGTGTTCGGACCAAGATGGAGAGAGACATCCTCGC
TGACGTGAACCACCCGTTCGTGGTGAAGCTACATTATGCCTTCCAGACCGAGGGCAAGCTCTATCTTATT
CTGGACTTCCTGCGTGGTGGAGACCTGTTCACACGGCTCTCAAAGGAGGTCATGTTTACAGAGGAGGATG
TGAAGTTTTACCTGGCTGAGCTGGCACTGGGCCTGGACCACCTGCACAGCTTGGGCATTATTTACAGAGA
CCTCAAGCCTGAGAATATCCTTTTGGATGAGGAGGGCCACATCAAACTCACTGACTTTGGCCTGAGCAAG
GAGGCCATAGACCATGAGAAGAAGGCTTACTCCTTCTGCGGGACAGTGGAGTACATGGCGCCCGAGGTTG
TCAACCGCCAGGGTCACACCCACAGTGCAGACTGGTGGTCCTATGGGGTGCTGATGTTTGAGATGCTGAC
GGGCTCCCTGCCCTTCCAGGGGAAGGACCGGAAGGAGACCATGACCTTGATTTTGAAGGCGAAGCTAGGC
ATGCCCCAGTTTCTGAGCACGGAAGCCCAGAGCCTCCTGCGGGCCCTGTTCAAGAGGAATCCTGCCAATC
GGCTTGGCTCGGGCCCTGATGGGGCAGAGGAAATTAAGAGACATATCTTCTACTCCACCATTGACTGGAA
TAAGCTCTACCGGCGTGAGATCAAGCCCCCTTTCAAGCCGGCTGTGGCCCAGCCCGACGACACCTTCTAC
TTTGATACCGAGTTCACGTCACGCACACCCAGGGATTCGCCAGGCATCCCTCCCAGTGCTGGTGCCCATC
AGCTGTTCCGTGGCTTCAGCTTCGTGGCCACTGGTCTGATGGAGGACGACGGCAAGCCTCGGACCACTCA
GGCCCCCCTACACTCGGTGGTACAGCAACTCCACGGGAAGAACTTGGTTTTCAGTGACGGCTACGTAGTA
AAGGAGACGATCGGCGTGGGCTCCTACTCTGTGTGTAAGCGTTGTGTCCACAAGGCCACCAACATGGAGT
ATGCTGTCAAGGTCATCGACAAGAGCAAAAGAGATCCCTCAGAAGAGATTGAGATTCTTCTGCGGTATGG
CCAGCACCCCAACATCATCACCCTGAAAGATGTGTACGATGATGGTAAGCACGTGTACCTGGTGACAGAG
CTGATGAGGGGCGGCGAGCTGCTGGATAAGATCCTACGGCAGAAATTCTTCTCAGAGCGGGAGGCCAGCT
TCGTCCTGCACACGATCAGCAAGACTGTGGAATACTTGCACTCTCAAGGGGTTGTCCACAGAGATCTCAA
ACCCAGTAACATCCTCTATGTGGATGAGTCTGGGAACCCCGAGTGCCTGCGCATCTGCGACTTTGGCTTT
GCCAAGCAGCTACGGGCCGAGAACGGACTCCTCATGACACCTTGCTACACAGCCAACTTTGTGGCACCTG
AGGTGCTGAAGCGCCAGGGCTACGATGAAGGCTGTGACATATGGAGCCTGGGCATTCTGCTGTACACGAT
GCTGGCAGGATACACTCCATTTGCCAATGGGCCCAGTGACACCCCAGAGGAGATCCTCACCCGGATCGGC
AGCGGGAAGTTCACCCTCAGTGGGGGAAACTGGAACACGGTTTCAGAGACAGCCAAGGACTTGGTATCTA
AGATGCTGCATGTGGACCCCCACCAGCGCCTCACAGCCAAGCAGGTCCTGCAGCACCCATGGATCACCCA
GAAAGACAAGCTTCCCCAGAGCCAGTTGTCCCACCAAGACCTGCAGCTCGTGAAGGGAGCCATGGCGGCT
ACATACTCTGCTCTCAATAGCTCCAAACCCACCCCTCAGCTCAAGCCAATTGAGTCGTCTATCCTGGCCC
AGCGGCGGGTGAGGAAGCTGCCATCCACCACCCTGTGA

Translation (735 aa):
MPLAQLKEPWPLMELVPLDPENGQTSGEEAGLQPSKDEAILKEISITHHVKAGSEKADPSQFELLKVLGQ
GSFGKVFLVRKVTRPDSGHLYAMKVLKKATLKVRDRVRTKMERDILADVNHPFVVKLHYAFQTEGKLYLI
LDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSK
EAIDHEKKAYSFCGTVEYMAPEVVNRQGHTHSADWWSYGVLMFEMLTGSLPFQGKDRKETMTLILKAKLG
MPQFLSTEAQSLLRALFKRNPANRLGSGPDGAEEIKRHIFYSTIDWNKLYRREIKPPFKPAVAQPDDTFY
FDTEFTSRTPRDSPGIPPSAGAHQLFRGFSFVATGLMEDDGKPRTTQAPLHSVVQQLHGKNLVFSDGYVV
KETIGVGSYSVCKRCVHKATNMEYAVKVIDKSKRDPSEEIEILLRYGQHPNIITLKDVYDDGKHVYLVTE
LMRGGELLDKILRQKFFSEREASFVLHTISKTVEYLHSQGVVHRDLKPSNILYVDESGNPECLRICDFGF
AKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIG
SGKFTLSGGNWNTVSETAKDLVSKMLHVDPHQRLTAKQVLQHPWITQKDKLPQSQLSHQDLQLVKGAMAA
TYSALNSSKPTPQLKPIESSILAQRRVRKLPSTTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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