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Report for CCDS1877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1877.1 Public Homo sapiens 2 LGALSL 24 110 108 CCDS HistoryNCBI Gene:29094Re-query CCDS DB by CCDS ID:1877.1Re-query CCDS DB by GeneID:29094See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1877.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000238875.10 ENSP00000238875.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000238875.10Link to Ensembl Protein Viewer:ENSP00000238875.4Re-query CCDS DB by Nucleotide ID:ENST00000238875Re-query CCDS DB by Protein ID:ENSP00000238875
Original member Current member NCBI NM_014181.3 NP_054900.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014181.3Link to Protein Sequence:NP_054900.2Re-query CCDS DB by Nucleotide ID:NM_014181Re-query CCDS DB by Protein ID:NP_054900Link to BLAST:NP_054900.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054900.2 172 Q3ZCW2 172 100% 0 0

Chromosomal Locations for CCDS 1877.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 64454546 64454581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 64455344 64455415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 64455589 64455677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 64456288 64456465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 64458285 64458428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGCGGGATCAGTGGCCGACAGCGATGCCGTGGTGAAACTAGATGATGGCCATTTAAACAACTCTTTGA
GCTCTCCAGTTCAAGCGGACGTGTACTTCCCACGACTGATAGTTCCATTTTGTGGGCACATTAAAGGTGG
CATGAGACCAGGCAAGAAGGTGTTAGTGATGGGCATCGTAGACCTCAACCCAGAGAGCTTTGCAATCAGC
TTGACCTGTGGGGACTCAGAAGACCCTCCTGCCGATGTGGCAATCGAACTCAAAGCTGTGTTCACAGATC
GGCAGCTACTCAGAAATTCTTGTATATCTGGGGAGAGGGGTGAAGAACAGTCAGCAATCCCTTACTTTCC
ATTCATTCCAGACCAGCCATTCAGGGTGGAAATTCTTTGTGAGCACCCACGTTTCCGAGTGTTTGTGGAT
GGACACCAACTTTTTGATTTTTACCATCGCATTCAAACGTTATCTGCAATTGACACCATAAAGATAAATG
GAGACCTCCAGATCACCAAGCTTGGCTGA

Translation (172 aa):
MAGSVADSDAVVKLDDGHLNNSLSSPVQADVYFPRLIVPFCGHIKGGMRPGKKVLVMGIVDLNPESFAIS
LTCGDSEDPPADVAIELKAVFTDRQLLRNSCISGERGEEQSAIPYFPFIPDQPFRVEILCEHPRFRVFVD
GHQLFDFYHRIQTLSAIDTIKINGDLQITKLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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