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Report for CCDS18855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18855.1 Public Mus musculus 4 Padi3 23 108 98 CCDS HistoryNCBI Gene:18601Re-query CCDS DB by CCDS ID:18855.1Re-query CCDS DB by GeneID:18601See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18855.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026377.8 ENSMUSP00000026377.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026377.8Link to Ensembl Protein Viewer:ENSMUSP00000026377.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000026377Re-query CCDS DB by Protein ID:ENSMUSP00000026377
Original member Current member NCBI NM_011060.4 NP_035190.3 Accepted alive Link to Nucleotide Sequence:NM_011060.4Link to Protein Sequence:NP_035190.3Re-query CCDS DB by Nucleotide ID:NM_011060Re-query CCDS DB by Protein ID:NP_035190Link to BLAST:NP_035190.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035190.3 664 Q9Z184 664 100% 0 0

Chromosomal Locations for CCDS 18855.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 140786401 140786634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140788837 140788962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140789713 140789792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140791163 140791265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140791358 140791502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140792978 140793129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140793837 140793944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140795613 140795724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140795813 140795916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140796337 140796515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140798049 140798174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140798905 140799022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140800081 140800142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140801545 140801617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140803467 140803647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140810516 140810607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1995 nt):
ATGTCTCTACAGAGGATTGTGCGTGTGTCTCTGGAGCACCCCACCAGCGCTGTGTGTGTGGCAGGGGTTG
AGACCATCGTGGACATTTATGGGGCGGTTCCTGAGGGCACAGACATGTTTGAGGTCTACGGGACACCGGG
AGTGGACATCTATGTGTCTCCCAGCATGGAGAGGAGCCGAGAGCGAGCTGACACCAGGCGGTGGTGCTTC
AACAAGGGCCTGGAGATTATTGTAATCATGAACTCCCCTAGCAATGACCTCAACGACAGCCATGTTCAGA
TAGCCTACCACTCCAGCCGAGAGCATTTGCCCCTGGCCTATGCAGTACTCTACCTCACCTGTGTGGACAT
CACCCTAGACTGTGACATGAACTGTGCGGACCGGCAGGACAGGAGCTTCGTGGATAAGAGGCAGTGGGTG
TGGGGGCCTGATGGGTACGGAGCCATCTTGCTGGTGAACTGTGATCGGGACAATGTCGACTCTAATGCCC
AAGATAACTGTGACCAATATGTGCGTTGCCTGCAAGATCTGGAAGACATGTCCGTCATGGTCCTACGGAC
CCAGGGCCCCGAAGCCCTCTTTGAGGACCACAGGCTTATCCTCCACACCTCCAGCTGTGATGCAGAGCGG
GCACGGGTCTTCCATGTCTGCGGCCCCGAGGATTCCTGTGAGTCCTATAAGTGTGTTCTGGGCCCAGACA
GGATGTCCTATGAGGTGCCCCGCCTGAAGGGCTATGAGGAGCGCTTCTTCGTGGAGGGCCTCTCCTTCCC
GGATGCAGGCTTCCCAGGGCTCATTTCCTTCCATGTCACTCTGCTGGATGATTCTAATGAGGACTTCTCC
GAGACCCCCATCTTCACCGACACAGCAGTGTTCCGGGTGGCCCCCTGGATCATGACACCCAGCACCCTGC
CACCCCTAGAGGTGTACGTGTGCCGGGTGAGGAATAACACCTGCTTTGTGGAAGCCGTGGAGGAGCTGGC
TAGGAAGGCGGGCTGCAAACTCACCATCTGTCCTCAGGCAGAGAACCGGAACGACCGCTGGATCCAGGAT
GAGATGGAGCTGGGGTATGTGCAGGCGCCACACAAGACCTTGCCGGTGGTCTTCGATTCTCCGAGGAACG
GAGAGCTGCAGGGCTTCCCTTACAAAAGGATCCTGGGTCTAGATTTCGGCTATGTGACACGGGAACCTAA
AGACAGTTCTGTGAGTGGTCTGGACTCTTTTGGCAACCTGGAGGTCAGCCCACCCGTGGTGGCCAATGGG
AAGGAGTATCCCTTGGGGAGAATCCTCATCGGGGGCAACCTGCCTGGGTCGAGAGGCCGCAGAGTGACCC
AGGTGGTGCGAAACTTCCTCCATGCCCAGAAAGTGCAACCTCTGGTGGAGCTGTTTGTGGACTGGCTGGC
TGTGGGCCACGTGGATGAGTTCCTGAGCTTCGTCCCTGCACCCGACGGGAAGGGCTTCCGGCTCCTCCTG
GCCAGCCCTGGCGCCTGCTTCAGGCTATTCCAGGAAAAGCAGAAGTGGGGCCATGGCCGGTCCCTGCTTT
TCGAGGGTGTCATTGGCGACAGGCGGGTCCAGACCGTCTCCATCAATCAGATTCTTAACAACCAGAGCCT
TATCAACTTTAATAAGTTTGCACAGAGCTGTATCGACTGGAACCGCGAGGTACTGAAGCGGGAGCTGGGC
CTGGCGGAGGGTGACATCATCGACATCCCGCAGCTCTTCAAGACGGAGAAGAGGAAGGCAGTAGCGTTCT
TCCCCGACTTGGTGAATATGCTGGTCCTGGGCAAGCACCTGGGCATCCCCAAGCCCTTCGGGCCCATCAT
CAATGGTCGCTGCTGCCTGGAGGAGAAGGTGCGCTCCCTGCTGGAGCCGCTGGGTCTGCACTGCACCTTC
ATCGATGACTTCACGCCATACCACATGCTGCACGGGGAGGTTCACTGTGGCACCAACGTGCGCCGGGAGC
CCTTCGCCTTCAAGTGGTGGCACATGGTGCCCTGA

Translation (664 aa):
MSLQRIVRVSLEHPTSAVCVAGVETIVDIYGAVPEGTDMFEVYGTPGVDIYVSPSMERSRERADTRRWCF
NKGLEIIVIMNSPSNDLNDSHVQIAYHSSREHLPLAYAVLYLTCVDITLDCDMNCADRQDRSFVDKRQWV
WGPDGYGAILLVNCDRDNVDSNAQDNCDQYVRCLQDLEDMSVMVLRTQGPEALFEDHRLILHTSSCDAER
ARVFHVCGPEDSCESYKCVLGPDRMSYEVPRLKGYEERFFVEGLSFPDAGFPGLISFHVTLLDDSNEDFS
ETPIFTDTAVFRVAPWIMTPSTLPPLEVYVCRVRNNTCFVEAVEELARKAGCKLTICPQAENRNDRWIQD
EMELGYVQAPHKTLPVVFDSPRNGELQGFPYKRILGLDFGYVTREPKDSSVSGLDSFGNLEVSPPVVANG
KEYPLGRILIGGNLPGSRGRRVTQVVRNFLHAQKVQPLVELFVDWLAVGHVDEFLSFVPAPDGKGFRLLL
ASPGACFRLFQEKQKWGHGRSLLFEGVIGDRRVQTVSINQILNNQSLINFNKFAQSCIDWNREVLKRELG
LAEGDIIDIPQLFKTEKRKAVAFFPDLVNMLVLGKHLGIPKPFGPIINGRCCLEEKVRSLLEPLGLHCTF
IDDFTPYHMLHGEVHCGTNVRREPFAFKWWHMVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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