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Report for CCDS18914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18914.1 Public Mus musculus 4 Tnfrsf1b 23 108 98 CCDS HistoryNCBI Gene:21938Re-query CCDS DB by CCDS ID:18914.1Re-query CCDS DB by GeneID:21938See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18914.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030336.10 ENSMUSP00000030336.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030336.10Link to Ensembl Protein Viewer:ENSMUSP00000030336.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030336Re-query CCDS DB by Protein ID:ENSMUSP00000030336
Original member Current member NCBI NM_011610.3 NP_035740.2 Accepted alive Link to Nucleotide Sequence:NM_011610.3Link to Protein Sequence:NP_035740.2Re-query CCDS DB by Nucleotide ID:NM_011610Re-query CCDS DB by Protein ID:NP_035740Link to BLAST:NP_035740.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035740.2 474 P25119 474 100% 0 0

Chromosomal Locations for CCDS 18914.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 145215787 145216100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145219729 145219936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145222954 145222988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145223503 145223580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145224252 145224484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145224812 145224905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145225330 145225482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145227468 145227596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145229004 145229106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145246724 145246801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGGCGCCCGCCGCCCTCTGGGTCGCGCTGGTCTTCGAACTGCAGCTGTGGGCCACCGGGCACACAGTGC
CCGCCCAGGTTGTCTTGACACCCTACAAACCGGAACCTGGGTACGAGTGCCAGATCTCACAGGAATACTA
TGACAGGAAGGCTCAGATGTGCTGTGCTAAGTGTCCTCCTGGCCAATATGTGAAACATTTCTGCAACAAG
ACCTCGGACACCGTGTGTGCGGACTGTGAGGCAAGCATGTATACCCAGGTCTGGAACCAGTTTCGTACAT
GTTTGAGCTGCAGTTCTTCCTGTACCACTGACCAGGTGGAGATCCGCGCCTGCACTAAACAGCAGAACCG
AGTGTGTGCTTGCGAAGCTGGCAGGTACTGCGCCTTGAAAACCCATTCTGGCAGCTGTCGACAGTGCATG
AGGCTGAGCAAGTGCGGCCCTGGCTTCGGAGTGGCCAGTTCAAGAGCCCCAAATGGAAATGTGCTATGCA
AGGCCTGTGCCCCAGGGACGTTCTCTGACACCACATCATCCACTGATGTGTGCAGGCCCCACCGCATCTG
TAGCATCCTGGCTATTCCCGGAAATGCAAGCACAGATGCAGTCTGTGCGCCCGAGTCCCCAACTCTAAGT
GCCATCCCAAGGACACTCTACGTATCTCAGCCAGAGCCCACAAGATCCCAACCCCTGGATCAAGAGCCAG
GGCCCAGCCAAACTCCAAGCATCCTTACATCGTTGGGTTCAACCCCCATTATTGAACAAAGTACCAAGGG
TGGCATCTCTCTTCCAATTGGTCTGATTGTTGGAGTGACATCACTGGGTCTGCTGATGTTAGGACTGGTG
AACTGCATCATCCTGGTGCAGAGGAAAAAGAAGCCCTCCTGCCTACAAAGAGATGCCAAGGTGCCTCATG
TGCCTGATGAGAAATCCCAGGATGCAGTAGGCCTTGAGCAGCAGCACCTGTTGACCACAGCACCCAGTTC
CAGCAGCAGCTCCCTAGAGAGCTCAGCCAGCGCTGGGGACCGAAGGGCGCCCCCTGGGGGCCATCCCCAA
GCAAGAGTCATGGCGGAGGCCCAAGGGTTTCAGGAGGCCCGTGCCAGCTCCAGGATTTCAGATTCTTCCC
ACGGAAGCCACGGGACCCACGTCAACGTCACCTGCATCGTGAACGTCTGTAGCAGCTCTGACCACAGTTC
TCAGTGCTCTTCCCAAGCCAGCGCCACAGTGGGAGACCCAGATGCCAAGCCCTCAGCGTCCCCAAAGGAT
GAGCAGGTCCCCTTCTCTCAGGAGGAGTGTCCGTCTCAGTCCCCGTGTGAGACTACAGAGACACTGCAGA
GCCATGAGAAGCCCTTGCCCCTTGGTGTGCCGGATATGGGCATGAAGCCCAGCCAAGCTGGCTGGTTTGA
TCAGATTGCAGTCAAAGTGGCCTGA

Translation (474 aa):
MAPAALWVALVFELQLWATGHTVPAQVVLTPYKPEPGYECQISQEYYDRKAQMCCAKCPPGQYVKHFCNK
TSDTVCADCEASMYTQVWNQFRTCLSCSSSCTTDQVEIRACTKQQNRVCACEAGRYCALKTHSGSCRQCM
RLSKCGPGFGVASSRAPNGNVLCKACAPGTFSDTTSSTDVCRPHRICSILAIPGNASTDAVCAPESPTLS
AIPRTLYVSQPEPTRSQPLDQEPGPSQTPSILTSLGSTPIIEQSTKGGISLPIGLIVGVTSLGLLMLGLV
NCIILVQRKKKPSCLQRDAKVPHVPDEKSQDAVGLEQQHLLTTAPSSSSSSLESSASAGDRRAPPGGHPQ
ARVMAEAQGFQEARASSRISDSSHGSHGTHVNVTCIVNVCSSSDHSSQCSSQASATVGDPDAKPSASPKD
EQVPFSQEECPSQSPCETTETLQSHEKPLPLGVPDMGMKPSQAGWFDQIAVKVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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