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Report for CCDS19033.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19033.1 Public Mus musculus 4 Cdk11b 23 108 98 CCDS HistoryNCBI Gene:12537Re-query CCDS DB by CCDS ID:19033.1Re-query CCDS DB by GeneID:12537See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19033.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067081.9 ENSMUSP00000070527.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067081.9Link to Ensembl Protein Viewer:ENSMUSP00000070527.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000067081Re-query CCDS DB by Protein ID:ENSMUSP00000070527
Original member Current member EBI ENSMUST00000105600.7 ENSMUSP00000101225.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105600.7Link to Ensembl Protein Viewer:ENSMUSP00000101225.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105600Re-query CCDS DB by Protein ID:ENSMUSP00000101225
Original member NCBI NM_007661.4 NP_031687.2 Updated not alive Link to Nucleotide Sequence:NM_007661.4Link to Protein Sequence:NP_031687.2Re-query CCDS DB by Nucleotide ID:NM_007661Re-query CCDS DB by Protein ID:NP_031687
Current member NCBI NM_007661.5 NP_031687.2 Accepted alive Link to Nucleotide Sequence:NM_007661.5Link to Protein Sequence:NP_031687.2Re-query CCDS DB by Nucleotide ID:NM_007661Re-query CCDS DB by Protein ID:NP_031687Link to BLAST:NP_031687.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031687.2 784 P24788-1 784 100% 0 0

Chromosomal Locations for CCDS 19033.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155625544 155625654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155626774 155626889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155628696 155628823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155630194 155630332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155634089 155634225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155638520 155638642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155639594 155639689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155639777 155639941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155640747 155640812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155641515 155641690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155642485 155642575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155647483 155647604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155647862 155647967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155648283 155648404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155648486 155648593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155648717 155648833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155649012 155649160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155649422 155649611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155649692 155649784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2355 nt):
ATGGGTGATGAAAAGGACTCTTGGAAAGTGAAAACGTTAGATGAAATTCTCCAGGAAAAGAAACGAAGGA
AAGAACAAGAGGAGAAAGCAGAGATAAAACGCTTAAAAAATTCTGATGACCGCGATTCCAAAAGGGATTC
CCTTGAGGAGGGGGAGCTGAGAGATCACCGAATGGAGATCACAATCAGGAACTCACCATATAGAAGAGAG
GATTCTATGGAAGACAGAGGAGAGGAGGATGATTCTCTGGCCATCAAACCACCCCAGCAAATGTCTCGGA
AAGAAAAGGCTCATCACAGAAAAGACGAGAAAAGAAAAGAGAAACGTCGACATCGTAGCCATTCAGCAGA
GGGAGGGAAACATGCCAGAGTGAAAGAGAAAGAAAGGGAGCACGAACGCCGGAAACGCCACCGAGAAGAA
CAAGATAAAGCTCGAAGGGAGTGGGAAAGACAGAAGAGGAGGGAAATGGCGAGAGAACATTCCAGAAGAG
AGAGGGACCGCCTGGAGCAGTTAGAAAGGAAGAGGGAGCGGGAGCGCAAGCTGAGGGAGCAGCAGAAGGA
GCAGCGGGAGCAGAAGGAGCGGGAACGGAGGGCAGAGGAGCGCCGCAAAGAGAGAGAAGCGCGTAGGGAA
GTCTCTGCACATCACCGTACCATGAGGGAGGAGTACAGTGATAAGGGGAAGGTTGGCCACTGGAGCCGCA
GCCCTCTGAGGCCACCAAGAGAGCGCTTTGAGATGGGAGACAACCGGAAGCCAGTAAAAGAAGAGAAGGT
GGAAGAGAGAGACTTGTTGTCAGACCTCCAAGACATCAGTGACAGCGAGAGGAAAACCAGCTCAGCTGAG
TCTTCATCAGCAGAATCAGGCTCAGGTTCTGAAGAGGAGGAGGAGGAAGAAGAAGAGGAAGAAGAAGAAG
AAGGGAGCACCAGTGAAGAATCAGAGGAAGAAGAGGAAGAAGAAGAGGAGGAGGAAGAAGAGGAGACTGG
GAGCAACTCTGAGGAGGCCTCTGAACAGTCCGCAGAAGAAGTCAGTGATGAGGAAATGAGTGAAGATGAA
GACAGAGAAAACGAGAACCACATCTTGGTTGTTCCAGAGTCACGATTTGACCGAGATTCTGGGGACAGTG
AAGAAGGGGAGGAAGAAGTTGGTGAAGGGACTCCACAGAGCAGTGCCCCCACCGAAGGAGACTATGTTCC
TGACTCTCCAGCACTGTCACCTATTGAGCTAAAACAAGAACTGCCCAAATACCTGCCAGCCCTGCAGGGA
TGCAGGAGTGTAGAGGAGTTTCAGTGTCTGAACAGGATTGAAGAAGGCACCTATGGGGTGGTCTACAGAG
CAAAGGACAAGAAAACAGATGAAATTGTGGCTCTGAAGCGGTTAAAGATGGAGAAGGAGAAGGAAGGCTT
CCCAATCACGTCGCTGAGGGAAATCAACACCATCCTCAAGGCCCAGCACCCCAACATCGTCACCGTCAGG
GAAATTGTTGTGGGAAGTAACATGGACAAGATCTACATTGTGATGAACTACGTGGAACATGACCTCAAGA
GCCTAATGGAGACCATGAAGCAGCCCTTCCTGCCAGGGGAGGTGAAGACCCTGATGATTCAGCTGCTGAG
TGGGGTAAAGCACCTCCATGACAATTGGATCCTACACCGTGACCTGAAGACCTCTAACCTCCTGCTGAGC
CATGCTGGCATTCTCAAGGTGGGCGACTTTGGGCTGGCTCGGGAGTATGGTTCACCCCTAAAGGCCTACA
CTCCAGTTGTTGTAACCCTGTGGTATCGTGCCCCAGAACTACTGCTTGGTGCTAAGGAATACTCCACAGC
TGTGGACATGTGGTCGGTAGGCTGCATATTTGGAGAACTGCTGACACAGAAACCTCTGTTCCCTGGGAAG
TCAGATATTGATCAGATTAACAAGATTTTCAAGGACCTGGGTACTCCTAGTGAGAAAATCTGGCCTGGCT
ATAATGACCTCCCAGCCGTCAAGAAGATGACCTTCAGCGAGTATCCCTATAACAACCTCCGCAAGAGATT
TGGGGCTTTGTTATCAGATCAAGGCTTTGATCTCATGAACAAGTTCCTGACATACTACCCTGGCAGGAGG
ATCAACGCAGAAGATGGCCTCAAGCACGAATATTTCCGAGAGACTCCCCTCCCCATCGACCCATCCATGT
TCCCCACGTGGCCTGCCAAGAGTGAGCAGCAGAGAGTGAAGCGAGGCACGAGTCCACGGCCTCCTGAGGG
CGGCCTGGGCTACAGCCAGCTGGGTGATGATGACCTGAAGGAGACGGGCTTCCACCTCACCACCACCAAC
CAGGGAGCCTCAGCTGCAGGCCCTGGCTTCAGCCTCAAGTTCTGA

Translation (784 aa):
MGDEKDSWKVKTLDEILQEKKRRKEQEEKAEIKRLKNSDDRDSKRDSLEEGELRDHRMEITIRNSPYRRE
DSMEDRGEEDDSLAIKPPQQMSRKEKAHHRKDEKRKEKRRHRSHSAEGGKHARVKEKEREHERRKRHREE
QDKARREWERQKRREMAREHSRRERDRLEQLERKRERERKLREQQKEQREQKERERRAEERRKEREARRE
VSAHHRTMREEYSDKGKVGHWSRSPLRPPRERFEMGDNRKPVKEEKVEERDLLSDLQDISDSERKTSSAE
SSSAESGSGSEEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEEETGSNSEEASEQSAEEVSDEEMSEDE
DRENENHILVVPESRFDRDSGDSEEGEEEVGEGTPQSSAPTEGDYVPDSPALSPIELKQELPKYLPALQG
CRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVR
EIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQLLSGVKHLHDNWILHRDLKTSNLLLS
HAGILKVGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGK
SDIDQINKIFKDLGTPSEKIWPGYNDLPAVKKMTFSEYPYNNLRKRFGALLSDQGFDLMNKFLTYYPGRR
INAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQRVKRGTSPRPPEGGLGYSQLGDDDLKETGFHLTTTN
QGASAAGPGFSLKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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