NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19099.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19099.1 Public Mus musculus 5 Sema3c 23 108 98 CCDS HistoryNCBI Gene:20348Re-query CCDS DB by CCDS ID:19099.1Re-query CCDS DB by GeneID:20348See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19099.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030568.13 ENSMUSP00000030568.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030568.13Link to Ensembl Protein Viewer:ENSMUSP00000030568.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030568Re-query CCDS DB by Protein ID:ENSMUSP00000030568
Original member Current member NCBI NM_013657.5 NP_038685.3 Accepted alive Link to Nucleotide Sequence:NM_013657.5Link to Protein Sequence:NP_038685.3Re-query CCDS DB by Nucleotide ID:NM_013657Re-query CCDS DB by Protein ID:NP_038685Link to BLAST:NP_038685.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038685.3 751 Q62181 751 100% 0 0

Chromosomal Locations for CCDS 19099.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 17576868 17576970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17653708 17653868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17655003 17655065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17662920 17663039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17670450 17670540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17672429 17672548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17675042 17675184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17676311 17676425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17678312 17678381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17681939 17682083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17694643 17694865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17711386 17711474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17714411 17714452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17716911 17717068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17721854 17721921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17724081 17724211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17727343 17727756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2256 nt):
ATGGCATTCCGGGCGATTTGTGTGTTGGTTGGAGTATTTATTTGTTCCATTTGTGTACGAGGATCTTCCC
AGCCCCAAGCAAGAGTTTATTTAACATTTGATGAGCTTCGAGAAACCAAAACCTCTGAGTACTTTAGTCT
GTCCCACCAGCAGTTAGACTACAGAATATTGCTGATGGATGAAGATCAAGACCGGATATATGTGGGGAGC
AAAGACCACATCCTGTCTTTGAATATCAACAATATCAGTCAAGAACCTTTGAGTGTTTTCTGGCCAGCAT
CAACAATCAAAGTTGAAGAGTGCAAAATGGCTGGCAAAGATCCTACACATGGCTGTGGAAATTTCGTCCG
GGTGATTCAGACATTCAACCGTACTCACCTGTATGTCTGTGGGAGTGGAGCGTTCAGCCCAGTGTGCACC
TACCTGAACCGGGGAAGGAGGTCAGAGGACCAGGTATTCATGATCGACTCTAAGTGTGAATCTGGCAAAG
GACGATGCTCTTTCAACCCGAATGTGAACACTGTGTCTGTTATGATCAATGAGGAACTCTTCTCAGGAAT
GTATATAGACTTCATGGGAACAGATGCTGCTATTTTCCGAAGTTTAACTAAGAGGAATGCAGTTCGAACT
GATCAACATAATTCAAAATGGCTGAGTGAACCCATGTTTGTGGACGCACATGTGATCCCAGATGGCACTG
ATCCAAATGATGCTAAGGTCTATTTCTTCTTCAAAGAAAGACTGACTGACAACAATAGGAGCACAAAACA
GATTCATTCCATGATTGCAAGAATATGCCCTAATGACACTGGTGGACAACGTAGTCTTGTCAACAAGTGG
ACCACATTCTTAAAGGCAAGACTTGTATGCTCAGTCACAGATGAAGATGGCCCAGAGACACATTTTGATG
AACTAGAGGATGTCTTTCTGCTGGAAACTGACAATCCAAGGACAACACTCGTGTATGGCATCTTCACCAC
ATCAAGCTCTGTTTTTAAGGGATCGGCAGTGTGTGTGTATCATTTATCTGATATACAGACTGTATTCAAT
GGGCCCTTTGCCCACAAGGAAGGGCCCAATCACCAGCTGATCTCCTATCAAGGTAGAATCCCATATCCTC
GCCCAGGAACTTGCCCAGGAGGGGCCTTTACACCCAATATGAGAACCACCAAGGACTTCCCAGATGACGT
TGTCACTTTTATTCGGAACCACCCTCTCATGTACAATTCCATCTACCCCATCCACAGAAGGCCTCTGATA
GTCCGCATAGGCACTGACTACAAGTACACAAAGATTGCTGTGGACCGTGTCAACGCTGCTGATGGGAGAT
ACCACGTTCTGTTTCTGGGCACAGATCGGGGCACCGTGCAGAAGGTCGTAGTCCTTCCTACCAATAGCTC
TGCCAGTGGGGAACTCATCCTGGAGGAGCTGGAAGTCTTCAAGAATCATGTTCCCATAACAACAATGAAA
ATCTCATCCAAAAAGCAACAGTTGTACGTGAGCTCCAATGAGGGGGTTTCCCAAGTCTCTCTGCATCGCT
GCCATATCTACGGCACAGCCTGTGCGGACTGCTGCTTGGCGAGGGATCCATACTGTGCCTGGGATGGCCA
CTCTTGCTCTAGGTTCTACCCCACTGGGAAGCGGAGGAGCCGAAGACAAGATGTGAGACATGGAAACCCA
CTGACACAATGCCGAGGGTTCAATCTGAAAGCATACAGAAATGCAGCTGAAATTGTTCAGTATGGAGTAA
GAAATAACAGCACTTTCCTTGAGTGTGCTCCCAAGTCTCCACAGGCATCTATCAAGTGGTTGCTGCAGAA
AGACAAAGACAGGAGGAAGGAGGTTAAACTGAACGAGCGCATTATAGCTACTTCCCAAGGACTACTGATT
CGCTCTGTTCAAGATTCTGACCAAGGACTCTACCACTGCATTGCCACTGAGAACAGCTTCAAACAGACCA
TAGCCAAGATCAACTTCAAAGTTTTAGATTCAGAAATGGTGGCCGTTGTGACAGACAAGTGGTCCCCGTG
GACATGGGCTGGCTCTGTGAGGGCTCTACCCTTCCATCCAAAGGACATCCTGGGGGCATTCAGCCACTCG
GAAATGCAGCTCATCAATCAGTACTGCAAAGACACCCGGCAGCAGCAGCAGCTGGGGGAAGAACCACAGA
AGATGAGAGGGGACTATGGCAAGCTGAAGGCTCTCATCAACAGCAGGAAAAGCAGAAACAGGAGGAATCA
GCTTCCAGAGTCATAA

Translation (751 aa):
MAFRAICVLVGVFICSICVRGSSQPQARVYLTFDELRETKTSEYFSLSHQQLDYRILLMDEDQDRIYVGS
KDHILSLNINNISQEPLSVFWPASTIKVEECKMAGKDPTHGCGNFVRVIQTFNRTHLYVCGSGAFSPVCT
YLNRGRRSEDQVFMIDSKCESGKGRCSFNPNVNTVSVMINEELFSGMYIDFMGTDAAIFRSLTKRNAVRT
DQHNSKWLSEPMFVDAHVIPDGTDPNDAKVYFFFKERLTDNNRSTKQIHSMIARICPNDTGGQRSLVNKW
TTFLKARLVCSVTDEDGPETHFDELEDVFLLETDNPRTTLVYGIFTTSSSVFKGSAVCVYHLSDIQTVFN
GPFAHKEGPNHQLISYQGRIPYPRPGTCPGGAFTPNMRTTKDFPDDVVTFIRNHPLMYNSIYPIHRRPLI
VRIGTDYKYTKIAVDRVNAADGRYHVLFLGTDRGTVQKVVVLPTNSSASGELILEELEVFKNHVPITTMK
ISSKKQQLYVSSNEGVSQVSLHRCHIYGTACADCCLARDPYCAWDGHSCSRFYPTGKRRSRRQDVRHGNP
LTQCRGFNLKAYRNAAEIVQYGVRNNSTFLECAPKSPQASIKWLLQKDKDRRKEVKLNERIIATSQGLLI
RSVQDSDQGLYHCIATENSFKQTIAKINFKVLDSEMVAVVTDKWSPWTWAGSVRALPFHPKDILGAFSHS
EMQLINQYCKDTRQQQQLGEEPQKMRGDYGKLKALINSRKSRNRRNQLPES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH