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Report for CCDS19115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19115.1 Public Mus musculus 5 Nup42 23 108 98 CCDS HistoryNCBI Gene:231042Re-query CCDS DB by CCDS ID:19115.1Re-query CCDS DB by GeneID:231042See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19115.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049887.12 ENSMUSP00000062766.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049887.12Link to Ensembl Protein Viewer:ENSMUSP00000062766.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000049887Re-query CCDS DB by Protein ID:ENSMUSP00000062766
Original member Current member NCBI NM_153092.4 NP_694732.3 Accepted alive Link to Nucleotide Sequence:NM_153092.4Link to Protein Sequence:NP_694732.3Re-query CCDS DB by Nucleotide ID:NM_153092Re-query CCDS DB by Protein ID:NP_694732Link to BLAST:NP_694732.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694732.3 420 Q8CIC2-1 420 99.5238% 0 2

Chromosomal Locations for CCDS 19115.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 24165077 24165203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24167343 24167565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24169296 24169390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24175454 24175530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24178000 24178086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24181081 24181165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24181908 24182476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGACCATATGCCAGTTTTTCCTTCAAGGCCGGTGCCGCTTCGGAGACCGCTGCTGGAACGAGCATCCCG
GCGCCCGGGGTGCGGGCGGGGCTCGGCAGCCGCCACCGCAGCAGCAGCCACCCTCAGGGAATAACCGTCG
AGGGTGGAATGCCAGCAGCCAGAGGTACTCCAACGTCATCCAGCCTTCCAGCTTCCCCAAGTCCACACCA
TGGGGTGGCAGCAGAGATCAGGACAAACCACCATTCGGCTCTTTTGATTCTGGGGCTTCTACCAGCAGAG
GCTTTGGGTCATCTCAAAACCCTTTTGCTTCACCTCTCTCTGATGAGCAGAAAGATGAAAAGAAACTTCT
GGAAGGAATTGTTAAGGACGTAGAAGTTTGGGAGTCGTCGGGACAGTGGATGTTTTCTGTTTACTCGCCA
GTGAGAAAGAAACCCAATATTTCAGGTTTCACAGACATTTCACCAGAGGAGTTGAGGCTTGAATACCATA
ACTTCTTAACCAGCAATAACTTACAGAGCTATCTAAACTCTGTTCAACAGCTTGTAAGTCAGTGGAGGAA
TAGGATAAATGAACTGAAAAATCTAACTATGTCGACCAAAGGAGCTCTGCTCTCTGACGTAAAAGATGGG
GTCAGTCAAGCAGTGCCTGCGTTTGGATTTGGAAGTAAGCAAGCAGGGTCGTTTGGGTCACCAGGCTTCC
CAGTGAATAACAGCAGCAGCAGTACTGTTCAGAACTTTAGTTTTAAAACAAGCCCTGGACTTGCCACTCC
TCCTTCCGGAAGCACTTCAGTATTTGGAAGTCACCCAGCCTTTGGGGCTGGGCCCTCTGCGGGCTCCTCC
ATCTCTTCCTCCACTCCAGCCTTTGGACTTGGGAAACCTGAAGCCACGTCTGCTGCATCATTTTCGTTCA
AGAGCCCTGAAGGTTCCAGTTTTGCATCACCTGGGTTTTCGGGATTTCCAGCCTCCATGGCAGCGAGTCC
CTCTGGCTCTACAACAGCCCCTCCCTTGAGAAGCGGCAGTTCTGTGGCTGGTTTTGGCAGTCCTAGCCCA
CATTCTCAGGCTGTATTTGCTAAACCTTCCACTGACGTGTTTGGAGGTAGCGGCATATCTACCTCTGTCC
TAGCCTCCGGTGCCGCTGATAACGCACTGTTCACACCCAGGGATCAGCTGATGAAGGAAGAACTGGAGCA
GTTTCAATCCCAGAGATTTACCCTGGGAAAAATTCCACTGAAGCCGCCACCGGTCGAGCTTCTGACTGTA
TAA

Translation (420 aa):
MTICQFFLQGRCRFGDRCWNEHPGARGAGGARQPPPQQQPPSGNNRRGWNASSQRYSNVIQPSSFPKSTP
WGGSRDQDKPPFGSFDSGASTSRGFGSSQNPFASPLSDEQKDEKKLLEGIVKDVEVWESSGQWMFSVYSP
VRKKPNISGFTDISPEELRLEYHNFLTSNNLQSYLNSVQQLVSQWRNRINELKNLTMSTKGALLSDVKDG
VSQAVPAFGFGSKQAGSFGSPGFPVNNSSSSTVQNFSFKTSPGLATPPSGSTSVFGSHPAFGAGPSAGSS
ISSSTPAFGLGKPEATSAASFSFKSPEGSSFASPGFSGFPASMAASPSGSTTAPPLRSGSSVAGFGSPSP
HSQAVFAKPSTDVFGGSGISTSVLASGAADNALFTPRDQLMKEELEQFQSQRFTLGKIPLKPPPVELLTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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