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Report for CCDS19189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19189.1 Public Mus musculus 5 Babam2 23 108 98 CCDS HistoryNCBI Gene:107976Re-query CCDS DB by CCDS ID:19189.1Re-query CCDS DB by GeneID:107976See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19189.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063813.10 ENSMUSP00000069133.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063813.10Link to Ensembl Protein Viewer:ENSMUSP00000069133.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000063813Re-query CCDS DB by Protein ID:ENSMUSP00000069133
Original member Current member NCBI NM_181279.1 NP_851796.1 Accepted alive Link to Nucleotide Sequence:NM_181279.1Link to Protein Sequence:NP_851796.1Re-query CCDS DB by Nucleotide ID:NM_181279Re-query CCDS DB by Protein ID:NP_851796Link to BLAST:NP_851796.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851796.1 420 Q8K3W0-1 420 100% 0 0

Chromosomal Locations for CCDS 19189.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31701850 31701927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31702031 31702103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31730468 31730555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31730967 31731043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31785578 31785672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31820478 31820672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31831085 31831159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31901055 31901164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32001361 32001460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32004710 32004780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32007235 32007317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32057511 32057664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32084581 32084644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGTCTCCAGAAATTGCCTTGAACCGAATTTCTCCAATGCTCTCCCCATTCATATCAAGCGTGGTCCGAA
ATGGGAAGATCCATGAAAAAGGGCCGTCACAGAAGCTTTCATTCAAGTCCTGCTCTTATCATCTGCCGAT
GTGTGCCTGTAATGAATGGTATGGTGTGCCAGATCTAGAGAAAGCATCGTACCTTTGGAGAAAGAAAGAA
AACCATCTGCCACTAGAAAAAGGCCAAAACTGTACATCATTGACTCCTGGACCCAACTGTGACCGCTTCA
AACTGCACATCCCGTACGCTGGGGAGACGTTAAAATGGGACATAATTTTCAATGCTCAGTACCCAGAGCT
GCCTCCTGATTTCATCTTTGGAGAGGATGCTGAGTTTCTGCCAGACCCCTCTGCGCTGCACAACCTTGCC
TCCTGGAACCCTTCAAACCCTGAGTGCCTGTTGCTCGTGGTGAAGGAGCTGGTGCAGCAGTACCACCAGT
TCCAGTGCGGCCGCCTCCGTGAGAGCTCGCGCCTCATGTTTGAGTACCAGACGCTCCTGGAAGAGCCTCA
GTATGGAGAGAACATGGAAATTTATGCTGGAAAGAAAAACAACTGGACTGGTGAATTTTCAGCTCGTTTT
CTATTGAAGTTACCAGTAGATTTCAGCAACATTCCCACATACCTTCTCAAGGATGTAAATGAAGACCCTG
GAGAAGATGTGGCCCTTCTTTCTGTCAGTTTTGAGGATACTGAAGCTACCCAGGTGTACCCCAAGTTGTA
CTTGTCACCCCGAATTGAGCATGCACTCGGAGGCTCCTCTGCTCTTCACATCCCTGCTTTCCCCGGAGGA
GGATGTCTCATTGATTATGTGCCTCAAGTGTGCCACCTGCTCACCAACAAGGTACAGTATGTGATTCAAG
GCTATCACAAAAGAAGAGAGTACATCGCAGCTTTCCTCAGTCACTTTGGCACAGGTGTCGTGGAATATGA
TGCAGAAGGCTTCACAAAACTTACTCTGCTGCTGATGTGGAAAGACTTTTGTTTTCTTGTCCACATTGAC
CTGCCCCTGTTTTTCCCTCGAGATCAGCCTACGCTCACATTTCAGTCAGTCTATCACTTTACCAACAGTG
GACAGCTTTACTCCCAAGCACAAAAAAACTACCCATACAGCCCCAGATGGGATGGAAATGAAATGGCCAA
GAGAGCAAAGGCTTATTTCAAAACCTTTGTCCCTCAGTTCCAGGAGGCCGCATTTGCCAATGGAAAGCTC
TAG

Translation (420 aa):
MSPEIALNRISPMLSPFISSVVRNGKIHEKGPSQKLSFKSCSYHLPMCACNEWYGVPDLEKASYLWRKKE
NHLPLEKGQNCTSLTPGPNCDRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLA
SWNPSNPECLLLVVKELVQQYHQFQCGRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARF
LLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGG
GCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHID
LPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAKRAKAYFKTFVPQFQEAAFANGKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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