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Report for CCDS19236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19236.1 Public Mus musculus 5 Afap1 23 108 98 CCDS HistoryNCBI Gene:70292Re-query CCDS DB by CCDS ID:19236.1Re-query CCDS DB by GeneID:70292See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064571.10 ENSMUSP00000067779.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064571.10Link to Ensembl Protein Viewer:ENSMUSP00000067779.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000064571Re-query CCDS DB by Protein ID:ENSMUSP00000067779
Original member NCBI NM_027373.2 NP_081649.1 Updated not alive Link to Nucleotide Sequence:NM_027373.2Link to Protein Sequence:NP_081649.1Re-query CCDS DB by Nucleotide ID:NM_027373Re-query CCDS DB by Protein ID:NP_081649
Current member NCBI NM_027373.3 NP_081649.1 Accepted alive Link to Nucleotide Sequence:NM_027373.3Link to Protein Sequence:NP_081649.1Re-query CCDS DB by Nucleotide ID:NM_027373Re-query CCDS DB by Protein ID:NP_081649Link to BLAST:NP_081649.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081649.1 731 Q80YS6 731 100% 0 0

Chromosomal Locations for CCDS 19236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 35935554 35935680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35936038 35936132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35945188 35945296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35948035 35948246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35950855 35951034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35961746 35961847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35962205 35962286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35968570 35968719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35974388 35974599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35976492 35976637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35984189 35984306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35989554 35989668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35993541 35993705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35995957 35996147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35997518 35997682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35999699 35999725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2196 nt):
ATGGAAGAGTTAATAGTTGAACTCCGCCTCTTTCTGGAGCTCCTGGACCACGAGTACCTCACATCAACTG
TCAGAGAGAAAAAGGCTGTGCTCACCAACATCCTGCTGCGCCTGCAGTCATCCAAGGGCTTTGAAGTGAA
GGACCATGCTCAGAAGGCAGAGGCCAACAACCTGCCGGCACCACCCCAGATGCCTCTGCCGGAGATCCCT
CAGCCATGGCTGCCTCCTGACAGCGGGCCTCCGCCTTTACCAACGTCCTCTCTCCCAGAGGGTTACTATG
AGGAAGCCGTGCCGCTGAGCCCTGGGAAAGCTCCAGAGTACATCACCTCAAATTATGACTCTGATGCCAT
GAGCAGTTCCTATGAGTCATATGATGAAGAGGAAGAGGACGGGAAGGGGAAGAAAACTCGGCATCAGTGG
CCGTCAGAGGAGGCCTCTATGGACCTGGTGAAAGACGCCAAGATCTGTGCCTTCCTGCTGCGCAAGAAAC
GCTTTGGCCAGTGGACCAAGCTGCTCTGCGTCATCAAAGACACCAAGCTGCTGTGCTATAAAAGTTCCAA
GGACCAGCAGCCTCAGATGGAGCTGCCGCTGCAGGGCTGCAGTATCACATACATCCCGAGAGACAGCAAG
AAGAAGAAACACGAGCTGAAAATCACCCAGCAAGGCACAGACCCTCTGGTTCTAGCTGTTCAGAGCAAGG
AACAGGCTGAGCAGTGGTTGAAGGTAATCAAAGAAGCCTACAGTGGCTGTAGCGGGCCCGTGGATCCGGA
ATGTTCTCCACCACCCAGCACCAGCGCCCCCGTGAACAAGGCAGAACTGGAGAAGAAATTGTCTTCAGAG
AGGCCCAGCTCTGATGGAGAAGGTGGTGTGGAAAACGGAGTCACCACGTGTAATGGAAAAGAACAAGCAA
AGAGGAAGAAACCTTCCAAGTCAGAGGCCAAGGGGACTGTGTCCAAGGTCACTGGGAAGAAAATTACCAA
GATCATCGGTCTGGGAAAGAAGAAGCCATCCACAGATGAGCAGACATCATCAGCAGAGGAGGATGTGCCC
ACTTGTGGCTACCTGAATGTGCTCTCTAACAGCCGCTGGCGGGAGCGCTGGTGCAGAGTGAAGGACAGCA
AACTCATTCTCCACAAGGACAGGGCTGACCTGAAGACCCACCTCGTCTCCATCCCCCTCCGTGGCTGCGA
GGTGATCCCGGGCCTGGATTCTAAGCACCCGTTGACCTTCCGGCTGCTTCGAAACGGACAGGAGGTGGCT
GTTCTAGAGGCATCATCGTCTGAAGACATGGGCAGGTGGATTGGCATCTTGCTGGCTGAGACGGGGTCCT
CCACGGACCCAGGAGCGCTGCACTACGACTACATCGATGTGGAGATGTCAGCAAATGTCATCCAGACGGC
GAAACAGACCTTCTGCTTTATGAACAGGCGGGCAGTGTCCACTAGCCCATACCTGGGGAGCCTCTCCAAC
GGCTACGCCCATCCCAGTGGGACAGCACTACACTATGATGACGTCCCCTGTGTCAACGGCTCGTTGAAGA
ACAAAAAACCGCCAGCGTCATCTAATGGGGTTCCTGTAAAGGGGAAGGCTCCCAGCAGTCAGCAAAAAAA
GGTGGAAACTGCAGGTGGTGTGAAACGGACAGCATCAAATGCTGAGCAGTACAAATATGGGAAGAACCGG
GTAGAAGCAGATGCCAAGCGGTTACAGTCCAAAGAGGAAGAGCTGCTGAAGAGGAAAGAGGCCCTACGGA
ACAGGCTGGCACAGCTGCGGAAAGAGAGGAAGGACCTGAGGGCCGCCATCGAAGTGAATGCAGGCAGGAA
GACCCAGGCAGCTCTGGAGGACAAGTTGAAGAGGCTGGAGGAAGAGTGCAAGCAGAGGGAGGCGGAGCGT
GTCAGCCTGGAGCTGGAGCTGACCGAGGTCAAGGAGAGCCTGAAGAAGGCCTTGGCGGGTGGCGTCACCC
TAGGACTGGCCATCGAGCCCAGGTCAGGGACATCCAGTCCACAGTCTCCTGTGTTTCGGCATCGGACTCT
GGAAAATTCTCCCATCTCCAGCTGTGATACAAGCGATGCTGAGGGGCCTTTGCCTGTGAACAGTGCAGCC
GTCCTGAAGAAGAGCCAGCCGTCCTCAGGCAGCTCCCCTTGCCGTGGCCACGTGCTGCAGAAGGCCAAGG
AGTGGGAGCTGAAGAATGGGACATAG

Translation (731 aa):
MEELIVELRLFLELLDHEYLTSTVREKKAVLTNILLRLQSSKGFEVKDHAQKAEANNLPAPPQMPLPEIP
QPWLPPDSGPPPLPTSSLPEGYYEEAVPLSPGKAPEYITSNYDSDAMSSSYESYDEEEEDGKGKKTRHQW
PSEEASMDLVKDAKICAFLLRKKRFGQWTKLLCVIKDTKLLCYKSSKDQQPQMELPLQGCSITYIPRDSK
KKKHELKITQQGTDPLVLAVQSKEQAEQWLKVIKEAYSGCSGPVDPECSPPPSTSAPVNKAELEKKLSSE
RPSSDGEGGVENGVTTCNGKEQAKRKKPSKSEAKGTVSKVTGKKITKIIGLGKKKPSTDEQTSSAEEDVP
TCGYLNVLSNSRWRERWCRVKDSKLILHKDRADLKTHLVSIPLRGCEVIPGLDSKHPLTFRLLRNGQEVA
VLEASSSEDMGRWIGILLAETGSSTDPGALHYDYIDVEMSANVIQTAKQTFCFMNRRAVSTSPYLGSLSN
GYAHPSGTALHYDDVPCVNGSLKNKKPPASSNGVPVKGKAPSSQQKKVETAGGVKRTASNAEQYKYGKNR
VEADAKRLQSKEEELLKRKEALRNRLAQLRKERKDLRAAIEVNAGRKTQAALEDKLKRLEEECKQREAER
VSLELELTEVKESLKKALAGGVTLGLAIEPRSGTSSPQSPVFRHRTLENSPISSCDTSDAEGPLPVNSAA
VLKKSQPSSGSSPCRGHVLQKAKEWELKNGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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