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Report for CCDS19341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19341.1 Public Mus musculus 5 Cwh43 23 108 98 CCDS HistoryNCBI Gene:231293Re-query CCDS DB by CCDS ID:19341.1Re-query CCDS DB by GeneID:231293See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19341.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031040.12 ENSMUSP00000031040.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031040.12Link to Ensembl Protein Viewer:ENSMUSP00000031040.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031040Re-query CCDS DB by Protein ID:ENSMUSP00000031040
Original member NCBI NM_181323.2 NP_851840.1 Updated not alive Link to Nucleotide Sequence:NM_181323.2Link to Protein Sequence:NP_851840.1Re-query CCDS DB by Nucleotide ID:NM_181323Re-query CCDS DB by Protein ID:NP_851840
Current member NCBI NM_181323.3 NP_851840.1 Accepted alive Link to Nucleotide Sequence:NM_181323.3Link to Protein Sequence:NP_851840.1Re-query CCDS DB by Nucleotide ID:NM_181323Re-query CCDS DB by Protein ID:NP_851840Link to BLAST:NP_851840.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851840.1 699 Q91YL7-1 699 100% 0 0

Chromosomal Locations for CCDS 19341.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 73406362 73406404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73408137 73408328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73411852 73411972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73413010 73413164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73414932 73415133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73416708 73416796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73417944 73418201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73421454 73421579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73423915 73423994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73428567 73428672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73430412 73430547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73431824 73431973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73434224 73434368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73438435 73438496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73441305 73441460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73453018 73453096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2100 nt):
ATGCCAGGCCTGTGGAGAGCAATTGCCCTGGAGACCTTGCTGGGCTACGTCTCCTGGTCTCTCTACCACG
GACTGAGCCCCATGATCTATTATTTTCCCCTGCAAACGCTGGAGCTCACAGGGCTGGAATTCTTTTGTGT
AGCCTTTCTCTCTCCGATACTCTTAACAATTCCCCCACTCTGGAAACTCGTCAATAAGAAGTGGACACTC
TCTCTGCTGAGGATCGTCACTGTAGGCAGCATAGCTTCCTTTGAGGCTCCAAATGCTAAGCTTCGACTGA
TGGTCCTCGCCCTTGGTGTGTCTTCTTCCCTGATAGTGCAAACTGTGACCTGGTGGTCAGGAAGTGGATT
GCAAAGGTACCTCAAAATCTGGGGATTCATTCTGGGACACGTCCTTCTTCTTGTCCTCCGAATATGGTAC
ACATCATTAAACCCAATTTGGAGCTATCAGATGTCCAACAGAGTAATTCTGACATTGAGTGCCGTAGCTG
TGCTTGACCGAATTGGCACAGATGGTGACTACAGAAACCCTGAGGGGAAGAAGCCCCGTGAGGTTGCCAC
GGGCAGGACCTCTCTATCTAGTTGGCTGTTGCCAGGCGCCGCCTTTGGGAGCCTCCTGTTCCTAACTCAC
TGGATCTTCGGAGAGGTCTCCATTGTTTCCAGATGGGCAGTCAGTGGTCATCCCCACCCAGGGCCAGATC
CTAATCCTTTTGGAGGTGCGGTTCTACTGGGCTTCTCAAGTGGACTGATGCTATCGGGTTCATCATGGCT
TCATGATGCTGGGTTAGCCTGGTGGATGACAGGAGCAGCTTCGGCCATGGGTCTCCTCTACCTGCGCACA
TGGGCAGCTGCTGTTTCTGGATGTGTCCTGGCAGTCTTTACGGGGTCTATGTGGCCTCAAGTACTTGGCC
ATCTTGTGAACTCAGGGAAAAACTCCGGAGAAGCCATGGCCACTGGCATGATCCTTTATGTTTTACAAAC
ATTTTTCTGTGCCTGGTGCACAGCGTTTAAGTTTGTTCCCGGAGGTGTCTACGCTAGAGAAAGATCTGAT
GTGCTTTTGGGGACCATAATGGTAATTATTGGATTGAGTATGCTGTTTGGACCTAAGAAAAACCTTGACT
TTCTTCTTCAAACAAAAAACAGTCCTAAAACGCTTTTGAGATGCAGTGAAAAATACATGAAACTCATTCT
GTGGCTGTTTGTTGGTGTGGGGTTACTGGGATTAGGGCTACGGCACAGAACCTACGAGAGGCAGTTAGGC
CGAGGGGCACCAGCAACAGTGGTCTCTGCTGCCATCTGGCCTTTTAGGTTTGGATATGACAATGAAGGCT
GGCCCAATCTAGAGAGGTCTGCTCAACTGCTCAAGGAGACAGGTGCAGATTTTATCACCATTTTGGAGAG
CGATGCTTCCAAGCCCTATATAGGGAACAACGACTTAACAATGTGGCTGGGGGAGAAGCTGGGTTTCTAC
ACAGACTTTGGGCCAAGCACCAGGGATCACACCTGGGGGATTATGGTGCTGTCTCGGTACCCGATTGTCA
GATCGGAACATCACCTTCTTCCGTCGCCAGAGGGCGAGATCGCACCAGCCATAACCATGACAGTTAACGT
CTCCAACAGACTGGTGGATTTTGTGGTGACACACTTTGGGAATCATGAAGATGACCTTGACAGGAAGCTA
CAGGCTATTGCAGTGTCAAAACTGCTGAAAAATTGTTCAAATCAAGTGATATTTCTGGGTTATATCACTT
CAGAGCCCGGTTCCAGAGATTACATACAACTCACAAAACATGGCAACGTGAAGGATATTGACAGCTCAGA
TGGAGACAGATGGTGTGAGTACATCATGTACCGGGGTCTGATCAGGTTGGGCTATGCAAGAATCTCTCAT
GCAGAACTGAGTGACTCTGAGATTCAGATGGCCAAATTCAGGATCCCGGATGATCCCGCCAATTACAGAG
ACAACCAGAAAGTCGTCATAGACCACCGAGGAGTTCCCAAGAACATTCACTTCAACCCCAGATTTGGCTC
CTACAAAGAAGGACACAATTATGAGAACACCCATCATTTTCACATGAATACACCCAAATACTTCGTTTGA

Translation (699 aa):
MPGLWRAIALETLLGYVSWSLYHGLSPMIYYFPLQTLELTGLEFFCVAFLSPILLTIPPLWKLVNKKWTL
SLLRIVTVGSIASFEAPNAKLRLMVLALGVSSSLIVQTVTWWSGSGLQRYLKIWGFILGHVLLLVLRIWY
TSLNPIWSYQMSNRVILTLSAVAVLDRIGTDGDYRNPEGKKPREVATGRTSLSSWLLPGAAFGSLLFLTH
WIFGEVSIVSRWAVSGHPHPGPDPNPFGGAVLLGFSSGLMLSGSSWLHDAGLAWWMTGAASAMGLLYLRT
WAAAVSGCVLAVFTGSMWPQVLGHLVNSGKNSGEAMATGMILYVLQTFFCAWCTAFKFVPGGVYARERSD
VLLGTIMVIIGLSMLFGPKKNLDFLLQTKNSPKTLLRCSEKYMKLILWLFVGVGLLGLGLRHRTYERQLG
RGAPATVVSAAIWPFRFGYDNEGWPNLERSAQLLKETGADFITILESDASKPYIGNNDLTMWLGEKLGFY
TDFGPSTRDHTWGIMVLSRYPIVRSEHHLLPSPEGEIAPAITMTVNVSNRLVDFVVTHFGNHEDDLDRKL
QAIAVSKLLKNCSNQVIFLGYITSEPGSRDYIQLTKHGNVKDIDSSDGDRWCEYIMYRGLIRLGYARISH
AELSDSEIQMAKFRIPDDPANYRDNQKVVIDHRGVPKNIHFNPRFGSYKEGHNYENTHHFHMNTPKYFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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