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Report for CCDS19358.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19358.1 Public Mus musculus 5 Srd5a3 23 108 98 CCDS HistoryNCBI Gene:57357Re-query CCDS DB by CCDS ID:19358.1Re-query CCDS DB by GeneID:57357See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19358.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031143.12 ENSMUSP00000031143.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031143.12Link to Ensembl Protein Viewer:ENSMUSP00000031143.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031143Re-query CCDS DB by Protein ID:ENSMUSP00000031143
Original member Current member NCBI NM_020611.4 NP_065636.2 Accepted alive Link to Nucleotide Sequence:NM_020611.4Link to Protein Sequence:NP_065636.2Re-query CCDS DB by Nucleotide ID:NM_020611Re-query CCDS DB by Protein ID:NP_065636Link to BLAST:NP_065636.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065636.2 330 Q9WUP4-1 330 100% 0 0

Chromosomal Locations for CCDS 19358.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 76140328 76140548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76147686 76147828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76149203 76149238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76149753 76149950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76153524 76153658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76154523 76154782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGGCTGGGTGGGCCGGGTTTGAGCTCTCGGCCCTGAACCCCCTGCGGACGCTGTGGCTGGCGCTGGCCG
CCGCCTTCCTGTTCGCGCTGCTGCTGCAGCTGGCGCCCGCCAGGCTGCTGCCGAGCTGCGCGCTCTTCCA
GGACCTGCTCCGCTACGGGAAGACCAAGCAGTCCGGCTCGCGGCGCCCCGCCGTCTGCAGGGCCTTCGAT
GTCCCCAAGAGGTACTTTTCTCACTTCTACGTCATCTCAGTTGTGTGGAATGGCTCCCTGCTCTGGCTAC
TTTCTCAGTCGTTGTTCCTGGGAGCACCTTTTCCAAACTGGCTTAGTGCTCTGCTCAGAACTCTTGGGGC
CACACAGTTCCAAGCCCTGGAGATGGAGTCCAAGGCTTCTCGGATGCCAGCGGCTGAGCTGGCTCTGTCT
GCCTTCTTGGTCTTGGTGTTCCTCTGGGTCCACAGCCTTCGGAGACTCTTTGAGTGCTTCTACGTCAGTG
TCTTCTCTAATGCAGCCATTCACGTTGTGCAGTACTGTTTCGGGCTTGTCTACTATGTGCTTGTTGGCCT
GACTGTACTGAGCCAAGTGCCCATGGATGATAAGAATGTGTATGTTCTGGGGAAGAATCTACTGATACAA
GCCCGGTGGTTCCACATCCTGGGCATGGTGATGTTCTTCTGGTCATCCGCCCATCAGTATAAATGCCACG
TCATCCTCAGCAACCTCAGGAGAAACAAAAAAGGTGTGGTCATCCACTGCCAGCACCGGATCCCCTTTGG
AGACTGGTTCGAGTACGTGTCTTCAGCTAACTACCTAGCAGAGCTGATGATCTACATCTCCATGGCTGTC
ACCTTTGGGCTCCACAACTTAACCTGGTGGCTGGTGGTGACGTATGTCTTCTCCAGCCAAGCCTTGTCCG
CATTCTTCAACCACAAGTTCTACAGAAGCACATTTGTCTCCTACCCAAAGCATAGGAAAGCGTTCCTCCC
ATTTTTGTTTTAA

Translation (330 aa):
MAGWAGFELSALNPLRTLWLALAAAFLFALLLQLAPARLLPSCALFQDLLRYGKTKQSGSRRPAVCRAFD
VPKRYFSHFYVISVVWNGSLLWLLSQSLFLGAPFPNWLSALLRTLGATQFQALEMESKASRMPAAELALS
AFLVLVFLWVHSLRRLFECFYVSVFSNAAIHVVQYCFGLVYYVLVGLTVLSQVPMDDKNVYVLGKNLLIQ
ARWFHILGMVMFFWSSAHQYKCHVILSNLRRNKKGVVIHCQHRIPFGDWFEYVSSANYLAELMIYISMAV
TFGLHNLTWWLVVTYVFSSQALSAFFNHKFYRSTFVSYPKHRKAFLPFLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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